Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2151
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    29   0.78 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   5.5  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   7.2  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   7.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.6  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -2

Query: 537 KGFNT*PRIISGLTSSNTTEPLGNLVMLHATSLPFLVCIINSTSSPRV 394
           +GF+T  R+++ +T SN ++P+   +  +  +LP L+      S+P +
Sbjct: 369 RGFHTSSRVLNTVTKSNNSKPIQRPLRENIFTLPNLLTFSRLLSAPLI 416


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 311 ENFGFIERADVVKEIFFHFSETKC-KEELTLGDDVEFIIQ 427
           ENFGF +   V       FS  KC K+ L   +D EF +Q
Sbjct: 613 ENFGFTDNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQ 652


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 678  SPCRSVNSPHWSLSPKGTSTSE*SAARYRMRPGR 577
            +P  SV SPH + SP  TS+S  SAA  R    R
Sbjct: 1251 TPRSSVPSPHSNASPSPTSSSMASAAPARTSVSR 1284


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 383  KEELTLGDDVEFIIQTRNGKEVACNITK 466
            +E+LTLG  V  ++Q R+    A +ITK
Sbjct: 1030 QEQLTLGKHVVRLLQVRDANGCAASITK 1057


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 140 FLPY--TKDDVEGNVTLRTGDAVSFQIATNQRGTLGACHIRFENPVHPVKYHG 292
           FLPY      +     L+  D  + Q+    R  +GA H+  +NP + V++ G
Sbjct: 189 FLPYHLLLTSIGNAGYLKYQDVSTGQLVAEHRTGMGASHVLHQNPHNAVEHVG 241


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 188 TGDAVSFQIATN-QRGTLGACHIRFENPVHPVK 283
           T D  +F + T   R T   C I   +P HP+K
Sbjct: 44  TSDKDTFNMVTEIPRWTQAKCEISLTSPFHPIK 76


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 756  DSSRREILVGRLS*S-RRSVAT*NCTQSPCRSVNSPHWSLSPKGTSTSE*SAA 601
            DSS   +    ++ S   S+AT + T SP  SV +   + S +GT++S  +AA
Sbjct: 1063 DSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAA 1115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,398
Number of Sequences: 5004
Number of extensions: 71892
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)