Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2151
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0158 - 1103461-1104186                                           33   0.20 
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40...    32   0.62 
08_01_0202 - 1638978-1639571                                           29   4.4  
07_03_1248 - 25165929-25166891,25169159-25169473                       29   4.4  
11_04_0181 + 14592392-14592421,14593627-14593633,14594222-145942...    28   7.6  

>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 311 ENFGFIERADVVKEIFFHFSETKCK--EELTLGDDVEFII-QTRNGKEVACNITKLPSGS 481
           + FGFI   D  +++F H S  K      L  G+ VEF I ++ +G+  A ++T  P GS
Sbjct: 18  KGFGFISPDDGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESEDGRTKAVDVTG-PDGS 76

Query: 482 VV 487
            V
Sbjct: 77  FV 78


>06_01_0041 +
           403634-403817,404154-404332,404431-404536,404620-404936,
           405231-405605,406199-406283,406570-408066,408575-408738
          Length = 968

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = -2

Query: 780 RRSPDT*KDSSRREILVGRLS*SRRSVAT*NCTQSPCRSVNSPHWSLSPKGTSTSE*SAA 601
           +  P+  K++S  +I+    + S R+  T    +    +++S +   + K +S    S A
Sbjct: 174 KNGPEIEKENSGHDIISLLQTPSERTATTAKSEKPDGSAISSAYQEDTTKTSSVLSASTA 233

Query: 600 RYRMRPGRGSFCVARTKLPRSKGFNT*PRIISGLTSSN--TTEPLGNLV 460
           R  + PG  +  V +   P+S   +  P++I   +  N   T   G LV
Sbjct: 234 RPLVPPGFSNAFVEKKLQPQSSNISLEPKVIDATSEGNILATAQFGGLV 282


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 311 ENFGFIERADVVKEIFFHFSETKCK--EELTLGDDVEFIIQTRN-GKEVACNITKLPSGS 481
           + FGFI   D  +++F H S  K      L  GD VEF + + N G+  A ++T    G+
Sbjct: 17  KGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGA 76

Query: 482 V 484
           +
Sbjct: 77  L 77


>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 690 NCTQSPCRSVNSPHWSLSP 634
           NC Q P RSV+ PH+ + P
Sbjct: 286 NCVQDPSRSVSFPHYQVMP 304


>11_04_0181 +
           14592392-14592421,14593627-14593633,14594222-14594265,
           14594351-14594419,14594461-14594517,14594824-14595204
          Length = 195

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 456 LHATSLPFLVCIINSTSSPRVNSSLHLVSEK*KNISFTTSARSIKPKFSFMEQT 295
           + +  LP  +   N TS      ++H+  E   + S+ + AR + PK  F  ++
Sbjct: 53  ISSEELPKFIIFENKTSDAIGKINMHMEREICNDTSYLSGARDVSPKLGFHSES 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,372,229
Number of Sequences: 37544
Number of extensions: 450500
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)