Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2151
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 32 0.42
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF067947-6|AAO25992.1| 255|Caenorhabditis elegans Hypothetical ... 30 1.7
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 29 3.9
AF016663-6|AAC70881.1| 180|Caenorhabditis elegans Hypothetical ... 29 3.9
AL033510-5|CAA22068.1| 239|Caenorhabditis elegans Hypothetical ... 29 5.2
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 28 6.8
U41106-3|AAA82411.1| 261|Caenorhabditis elegans Hypothetical pr... 28 9.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.0
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 32.3 bits (70), Expect = 0.42
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = +2
Query: 302 SMKENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEF---IIQTRNGKEVACN 457
S+ +GFI R D K+IF H S T+ TLGDD E +++ +NG E A N
Sbjct: 74 SVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPE-AAN 132
Query: 458 ITKLPSGSVV 487
+T P+G V
Sbjct: 133 VTG-PNGDNV 141
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Frame = +2
Query: 260 ENPVHPVKYHGVV--CSMKENFGFIERADVVKEIFFH----FSETKCKEELTLGDDVEFI 421
+ PV K G V ++K +GFI R D ++IF H + K +LGD+ E +
Sbjct: 13 DKPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVM 72
Query: 422 IQTRNGKE--VACNITKLPSGSV 484
G + A ++T G V
Sbjct: 73 FDIVEGSKGLEAASVTGPDGGPV 95
>AF067947-6|AAO25992.1| 255|Caenorhabditis elegans Hypothetical
protein T10B5.10 protein.
Length = 255
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 463 SNVTCHFFAISSLYNKLDIITESQFFFTFSFRKMKEYLF 347
S+ H +S+ L I T+S FTF+ RKM EY F
Sbjct: 142 SSAEFHLNDGTSIAALLQIATDSDLVFTFNARKMGEYCF 180
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +2
Query: 302 SMKENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEFIIQTRNGKE--VACNI 460
S+ +GFI R+D K++F H S+T+ TL D+ E + +GK A N+
Sbjct: 72 SVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANV 131
Query: 461 TKLPSG 478
T P+G
Sbjct: 132 TG-PAG 136
>AF016663-6|AAC70881.1| 180|Caenorhabditis elegans Hypothetical
protein F21E9.6 protein.
Length = 180
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = -2
Query: 495 SSNTTEPLGNLVMLHATSLPFLVCIINSTSSPRVN-SSLHLVSEK*KNISFTTSARSIKP 319
S+N TEPL ++ + + +L NS S+P +N S++ +++ + +N+ T S+ S P
Sbjct: 41 STNATEPLPMTLITRRSIVIYLNTTDNSDSTPFINDSNIAILNPEFENL--TNSSGSASP 98
Query: 318 KFSFMEQTT 292
S + T+
Sbjct: 99 TTSAIPATS 107
>AL033510-5|CAA22068.1| 239|Caenorhabditis elegans Hypothetical
protein Y40H7A.9 protein.
Length = 239
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 415 LDIITESQFFFTFSFRKMKEYLFYNIGTFNKTKIFFHGADNSMI 284
L I TE +F T + L + G + +T IFF ADNS I
Sbjct: 65 LPIFTELHYFSTSKHLRRWFALIFIAGFYWETCIFFMAADNSYI 108
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 169 FNIIFCIGQEETFSTSFIGYSTCIITRSFTFYFCCYSACDSSFA*YHFRCN 17
F++I +G E T TSF Y+T ++ S+ C ++S HF N
Sbjct: 12 FHVILGVGSESTNLTSFSIYATMMMNESYVPCLVCNDVKNTSM---HFGVN 59
>U41106-3|AAA82411.1| 261|Caenorhabditis elegans Hypothetical
protein W06A11.3 protein.
Length = 261
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 127 TSFIGYSTCIITRSFTFYFCCYSAC 53
TSFIG+ +C + R F F F + +C
Sbjct: 237 TSFIGHLSCFVFRLFYFVFHRFFSC 261
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 9.0
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Frame = +2
Query: 416 FIIQTRNGKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGNLVRATQND---PLPG 586
F + G + C T +G V + S EI+ + + ++ +T+ PLP
Sbjct: 3850 FNVDRNAGGFLKCRATNC-AGQV---ETSCEIVAADEISVISDSSITSSTRPHFVVPLPE 3905
Query: 587 RIRYRAADHSEVEVPFGDKDQCGEFTLRHG---DWVQFQVATDRRDQLKRPTNISLLDES 757
R+ + DH ++ F + + G D ++QV T+ + + + SL D++
Sbjct: 3906 RVTHTVNDHITIKCKFSGQPLPAAMWEKDGVLLDLQKYQVTTEDGTSILKIESASLDDKA 3965
Query: 758 FYVSGERREQG 790
Y E G
Sbjct: 3966 VYTCTIANEAG 3976
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.0
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Frame = +2
Query: 416 FIIQTRNGKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGNLVRATQND---PLPG 586
F + G + C T +G V + S EI+ + + ++ +T+ PLP
Sbjct: 3850 FNVDRNAGGFLKCRATNC-AGQV---ETSCEIVAADEISVISDSSITSSTRPHFVVPLPE 3905
Query: 587 RIRYRAADHSEVEVPFGDKDQCGEFTLRHG---DWVQFQVATDRRDQLKRPTNISLLDES 757
R+ + DH ++ F + + G D ++QV T+ + + + SL D++
Sbjct: 3906 RVTHTVNDHITIKCKFSGQPLPAAMWEKDGVLLDLQKYQVTTEDGTSILKIESASLDDKA 3965
Query: 758 FYVSGERREQG 790
Y E G
Sbjct: 3966 VYTCTIANEAG 3976
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.0
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Frame = +2
Query: 416 FIIQTRNGKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGNLVRATQND---PLPG 586
F + G + C T +G V + S EI+ + + ++ +T+ PLP
Sbjct: 3850 FNVDRNAGGFLKCRATNC-AGQV---ETSCEIVAADEISVISDSSITSSTRPHFVVPLPE 3905
Query: 587 RIRYRAADHSEVEVPFGDKDQCGEFTLRHG---DWVQFQVATDRRDQLKRPTNISLLDES 757
R+ + DH ++ F + + G D ++QV T+ + + + SL D++
Sbjct: 3906 RVTHTVNDHITIKCKFSGQPLPAAMWEKDGVLLDLQKYQVTTEDGTSILKIESASLDDKA 3965
Query: 758 FYVSGERREQG 790
Y E G
Sbjct: 3966 VYTCTIANEAG 3976
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,727
Number of Sequences: 27780
Number of extensions: 409819
Number of successful extensions: 1039
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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