Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2150
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 88 1e-18
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 35 0.013
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 30 0.37
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 28 1.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 3.5
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 26 4.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.6
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 4.6
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 88.2 bits (209), Expect = 1e-18
Identities = 70/200 (35%), Positives = 91/200 (45%), Gaps = 12/200 (6%)
Frame = +1
Query: 142 VLVKAEWISVDPYLRA------YNSYQAVPYDQ----FSYQVGVVVESKDSNYPIGTRVV 291
VL+K + SVDPYLR + SY P + ++ V VV+S Y G VV
Sbjct: 46 VLLKNIYTSVDPYLRMRMQSPKHASY-IPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVV 104
Query: 292 AHKGWCDHYVFTPSTQPN--TPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICK 465
GW + Y F P + YKLP + VG++GMP TAY G I K
Sbjct: 105 FVSGW-EEYTFVSKQALGFLQPINNPYKLPLIDF------VGSLGMPSQTAYCGLKHIGK 157
Query: 466 PKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVIGFAGTDDKVKWLEEELGFDKAFNYKTVD 645
PK + GQ+AK G V+G G+D+K K + + G+D FNYK
Sbjct: 158 PKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFK-ICLDSGYDSVFNYKKES 216
Query: 646 VPAALKEAAPNGIDCYFDNV 705
AL P GID YF+NV
Sbjct: 217 PFKALPRLCPKGIDIYFENV 236
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 526 GQIAKIKGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDC 690
G+ A+I G +VIG ++++ ++ GF + DVP + E NG+DC
Sbjct: 238 GRWAQILGASKVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDC 293
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 29.9 bits (64), Expect = 0.37
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 7/161 (4%)
Frame = +1
Query: 100 ELVEFVIPPLIDGEVLVKAEWISVDPYLRAYNSYQAVPYDQFSYQVG---VVVESKDSNY 270
E+ IP +GE+LVK E +++P N+ PY + VG +++
Sbjct: 24 EIQSVPIPQPKNGELLVKIEAAAINP-SDLMNATGGFPYTVYPRIVGRDYAGTVISGASH 82
Query: 271 PIGTRVVAHKGWCDHYVFT-PSTQPN---TPKDRIYKLPDLQGLSPSLGVGAVGMPGATA 438
+GTRV G FT T P+ ++P + + +VG+P TA
Sbjct: 83 LVGTRVFGTSG--SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEA---ASVGVPFTTA 137
Query: 439 YFGFLEICKPKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVI 561
Y L + K S V QIA+ GC+VI
Sbjct: 138 YLA-LSRGETKGSDIVLVVGALGAVGSAVCQIAEDWGCKVI 177
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 181 LRAYNSYQAVPYD---QFSYQVGVVVESKDSNYPIGTRVVAHKGWCDHYVFTPSTQPNTP 351
L AY +YQ V Y+ + SY+ ++ + G V+ + W + P++
Sbjct: 133 LNAYFAYQVVGYNGTGRVSYREALLAVFVEGFIFTGLTVIGLRQWLARVI--PASLKFAT 190
Query: 352 KDRIYKLPDLQGLSPSLGVGAVG 420
I + GLSPS G+G +G
Sbjct: 191 GAGIGLYLTIIGLSPSAGLGVIG 213
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 565 FAGTDDKVKWLEEEL 609
F+ +DD+V WLEE+L
Sbjct: 542 FSNSDDRVAWLEEQL 556
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 325 TPSTQPNTPKDRIYKL-PDLQGLSPSLGVGAVG 420
TP QP PK R ++L PDL ++ G ++G
Sbjct: 148 TPKPQPGNPKPRYFRLKPDLSVIN-RYGFNSIG 179
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +2
Query: 131 STARSSLKPNGSASTRI*GLTTLTKLYPTTSSVIKSVLLSNQRIATIR*ERELLRTKDGA 310
S A SS + AS+ T+ T TSS + S SN ++ L T
Sbjct: 148 SLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSAT 207
Query: 311 TTTSSL 328
T+SSL
Sbjct: 208 ATSSSL 213
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 550 CRVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDN 702
CR I G D W+++ G + K +++ A + G CY DN
Sbjct: 357 CRTIFMYGDKD---WMDDVAGLEATNRLKEMNIEAEHHIISNAGHHCYLDN 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,368
Number of Sequences: 5004
Number of extensions: 54573
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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