Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2150
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    28   7.5  
AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin p...    27   9.9  

>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
 Frame = +1

Query: 370 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAKI 543
           LP  +  SPS+ +   G+ G TA  G  +  +                   SL GQIA+I
Sbjct: 138 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 197

Query: 544 KGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNV 705
           +GC +VIG  G+DDK   L+ E GF+   NYKT +V   L   AP GID Y+DNV
Sbjct: 198 EGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNV 252


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
 Frame = +1

Query: 370 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAKI 543
           LP  +  SPS+ +   G+ G TA  G  +  +                   SL GQIA+I
Sbjct: 146 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 205

Query: 544 KGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNV 705
           +GC +VIG  G+DDK   L+ E GF+   NYKT +V   L   AP GID Y+DNV
Sbjct: 206 EGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNV 260


>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 7/207 (3%)
 Frame = +1

Query: 100 ELVEFVIPPLIDGEVLVK--AEWIS-VDPYLRA--YNSYQAVPYDQFSYQVGVV--VESK 258
           E VE  +P L   +VLV+  A  ++ VD Y+RA  Y     +PY       G V  V   
Sbjct: 25  EAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYVPGKDGAGFVELVGES 84

Query: 259 DSNYPIGTRVVAHKGWCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATA 438
             N  +G RV     W        ST      +R ++LP+  G+S   G  ++G+P  TA
Sbjct: 85  VKNVKVGDRV-----WYGSEA--DSTAEYVAVNRPFELPE--GVSFEEGA-SLGVPYLTA 134

Query: 439 YFGFLEICKPKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVIGFAGTDDKVKWLEEELGFD 618
           Y     +   K               S + Q+A  +    +G AG+ D ++++ + LG  
Sbjct: 135 YRALFHLAGAKTGDVILVHGASGGVGSALMQLAAWRNIEAVGTAGSADGIRFV-KSLGAR 193

Query: 619 KAFNYKTVDVPAALKEAAPNGIDCYFD 699
             +N+      + +K   P G +  F+
Sbjct: 194 NVYNHSDKQYVSKMKNDYPGGFNHIFE 220


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 457 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 353
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP 610


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 457 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 353
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677


>AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin
           protein 1 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +3

Query: 6   ENSRNHKSRDDLSKEIRREEPL*RCTKTRGLRISRICYTASDRRRGPR*SRMDQRRPVFK 185
           EN  +  S++   K ++RE+   RC K     I R      D+       RM+      +
Sbjct: 24  ENDMDQNSKNSTQKPVKREKRRYRCRKRSPATIERAKTVRRDKANARERRRMNSLNDALE 83

Query: 186 GLQ-LLPSCTLRP 221
            L+ +LP+    P
Sbjct: 84  HLRGILPALPDEP 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,047
Number of Sequences: 27780
Number of extensions: 313679
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)