Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2149
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:...   101   1e-20
UniRef50_O96545 Cluster: Putative gag-related protein; n=1; Lyma...    51   2e-05
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct...    46   9e-04
UniRef50_UPI0000D578AA Cluster: PREDICTED: similar to Nucleic-ac...    40   0.043
UniRef50_UPI0000D57792 Cluster: PREDICTED: similar to Nucleic-ac...    39   0.099
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei...    38   0.17 
UniRef50_A4R2Y6 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  

>UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:
           Gag-like protein - Bombyx mori (Silk moth)
          Length = 553

 Score =  101 bits (243), Expect = 1e-20
 Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
 Frame = +1

Query: 280 NPQPSTSTGLNTXXXXXXXXXXXXXXXXTAKPLKSANTSRPRIITPESDSLRQNPAPA-- 453
           +P P+ +T   T                 AK  K+AN SRPR  TP + ++R  P+P   
Sbjct: 126 DPSPAATTDGFTVVQKGKKRAAEARAPAAAKVSKAANASRPRPPTPVAPAVRATPSPRPV 185

Query: 454 --LKIAVPPPLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVATPGDHRTLSAFF 627
              K   PPP+IL+EKAAW+RV  ALKA  IN++ ARN+++GIQIKV TP DHR LS++ 
Sbjct: 186 AQSKTQTPPPVILQEKAAWDRVSLALKAKNINFVSARNLANGIQIKVTTPDDHRALSSYL 245

Query: 628 PK 633
            K
Sbjct: 246 RK 247



 Score = 37.9 bits (84), Expect = 0.23
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 623 FFRKERIGYHTYALQEERKLR 685
           + RKERI +HTY LQEER+LR
Sbjct: 244 YLRKERISFHTYTLQEERELR 264


>UniRef50_O96545 Cluster: Putative gag-related protein; n=1;
           Lymantria dispar|Rep: Putative gag-related protein -
           Lymantria dispar (Gypsy moth)
          Length = 537

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +1

Query: 415 PESDSLRQNPAPALKIAVPPPLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVAT 594
           P +DS    P    K   PPPL +R+K  W  +   L  N+I+Y  A++   GI++ + +
Sbjct: 146 PPTDSNTVAPPTVKKSLAPPPLYIRDKDKWLAISAWLNTNRISYKSAKSTPQGIRVDLHS 205

Query: 595 PGDHRTLS 618
             DHR++S
Sbjct: 206 SADHRSVS 213


>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
           DNA polymerase from mobile element jockey (Reverse
           transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
           similar to RNA-directed DNA polymerase from mobile
           element jockey (Reverse transcriptase) - Tribolium
           castaneum
          Length = 1336

 Score = 46.0 bits (104), Expect = 9e-04
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +1

Query: 400 PRIITPESDSLRQNPAPALKIAVPPPLILREKAAWNRVCQALKANKINYIHARNVSHGIQ 579
           PR+  P +       AP  K    PP+ LR+   W RV       K  +  AR+VS  I+
Sbjct: 166 PRVSPPTAPQGSTPTAPISKAPRIPPIFLRDAGKWQRVSSVANERKYGFTKARSVSDQIR 225

Query: 580 IKVATPGDHRTLSAF 624
           I+  T  D R+ + F
Sbjct: 226 IQPTTVADFRSFTKF 240


>UniRef50_UPI0000D578AA Cluster: PREDICTED: similar to
           Nucleic-acid-binding protein from mobile element jockey
           (ORF1); n=1; Tribolium castaneum|Rep: PREDICTED: similar
           to Nucleic-acid-binding protein from mobile element
           jockey (ORF1) - Tribolium castaneum
          Length = 347

 Score = 40.3 bits (90), Expect = 0.043
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 475 PLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVATPGDHRTLSAFF 627
           P++LRE   W+++   +    INY+ A+N   GI+I   T  D+  +  +F
Sbjct: 48  PIVLREVNKWHKIADEMTNKNINYLKAKNTPEGIKITPQTVTDYSLVIKYF 98


>UniRef50_UPI0000D57792 Cluster: PREDICTED: similar to
           Nucleic-acid-binding protein from mobile element jockey
           (ORF1); n=1; Tribolium castaneum|Rep: PREDICTED: similar
           to Nucleic-acid-binding protein from mobile element
           jockey (ORF1) - Tribolium castaneum
          Length = 295

 Score = 39.1 bits (87), Expect = 0.099
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 475 PLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVATPGDHR 609
           P+ILR+K+ W +V   LK   +NY  A ++  GI+I+  +  D++
Sbjct: 97  PIILRDKSKWVQVSNLLKTKHLNYTKATSLKDGIKIQPQSHADYK 141


>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           polyprotein - Nasonia vitripennis
          Length = 1249

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +1

Query: 463 AVPPPLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVATPGDHRTLS 618
           A PPP+++RE+  W ++ +AL  + I    A N+S G++I   T    R +S
Sbjct: 122 AKPPPILIREEDRWPKIQRALAEHGIQLRRAVNLSDGVKIYPETVDSFREIS 173


>UniRef50_A4R2Y6 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 642

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 397 RPRIITPESDSLRQNPAPALKIAVPPPLILR 489
           RPR ++ +S + R  PAP   +A PPPL LR
Sbjct: 148 RPRTMSQQSGNSRFQPAPTQGLAFPPPLSLR 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.127    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,134,192
Number of Sequences: 1657284
Number of extensions: 10556176
Number of successful extensions: 29271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29255
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)