Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2149
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.5  
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    26   4.4  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   7.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   7.8  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 667  LKRIGVITYAFLSEKRPRVSYGPPALRPLSVYRVRRFAHGYNLFYWP*GPGTRGS 503
            LK I       + +K   V YGPPA+   +    RR   G  + + P  P TRGS
Sbjct: 1414 LKTIVDYDKVMVLDKGVLVEYGPPAVLYHNNGHFRRMCDGSGITFLP--PETRGS 1466


>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 503 HAAFSRSISGGGTAILSAGAGFCRRESDSGVMIRGREVFADFNGL 369
           HA+FS  +   GT I + G        D   ++RGR++ A  N L
Sbjct: 95  HASFSEYLIFFGTPIGTEGHSGVHMADDYFTILRGRQLAASANDL 139


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 465 SDFKRGRGVLSQRVGLWRYD 406
           ++F +G G+    +GLW YD
Sbjct: 277 TNFTQGSGIFLTAIGLWLYD 296


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 364 TAKPLKSANTSRPRIITPESDSLRQNPAPALKIAVPPPLILREKAA 501
           T+  +K ++ S P +  P   +L+ NP+P+      PP+    K A
Sbjct: 301 TSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQA 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.127    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,436
Number of Sequences: 5004
Number of extensions: 38021
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)