Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2149
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 31 0.86
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 30 1.5
07_03_0793 + 21552499-21552729 30 2.0
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 29 3.5
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 29 4.6
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 4.6
06_01_0184 + 1433798-1434442 28 8.0
01_06_1661 - 38972368-38972391,38972822-38973490 28 8.0
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 31.1 bits (67), Expect = 0.86
Identities = 26/76 (34%), Positives = 36/76 (47%)
Frame = -2
Query: 638 VPFGKKAESVLWSPGVATFICIPCETFRAWI*FILLALRAWHTRFHAAFSRSISGGGTAI 459
+P + + + PGVA + I F I F+LL L A H + +AA S G G A
Sbjct: 20 LPSPPPSSATPFRPGVAVVVGILTSVFS--ITFLLL-LYAKHCKRNAAESSGPYGSGGAF 76
Query: 458 LSAGAGFCRRESDSGV 411
S+G G +SGV
Sbjct: 77 GSSGGGGAGERRNSGV 92
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 428 ESDSGVMIRGREVFADFNGLAVEFRDSTTETRLFLRATVLSPV 300
ES+ GV+I + FNG +T TRL LRA +L P+
Sbjct: 135 ESERGVIITNHSLSVTFNGSFDHMNIDSTRTRL-LRANLLQPL 176
>07_03_0793 + 21552499-21552729
Length = 76
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 491 SRSISGGGTAILSAGAGFCRRESDSGVMIRGREV 390
SR GGG + +G G RR D+G + RG ++
Sbjct: 18 SRRRQGGGQRVNRSGGGSMRRGGDNGSLARGDDI 51
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2
Query: 635 PFGKKAESVLWSPGVATFICIPCETFRAWI*FIL-LALRAWHTRFHAAFSRSISGGGTA- 462
P K A W PGV+ + + +AW+ F++ ++R TR A + G T
Sbjct: 293 PSSKNAPRSKWRPGVSGHVLVQARKGKAWVRFLVYTSVRC--TRDSHAKQLACGGELTTI 350
Query: 461 --ILSAGAGFCRRESDSG 414
IL+ AG R + D G
Sbjct: 351 IWILNEYAGIFRIDGDQG 368
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +1
Query: 448 PALKIAVPPPLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVATPGDHRTLSAFF 627
P K P L+L + A NR + K+ I N++ ++ + T AFF
Sbjct: 207 PITKYTSDPGLVLGRQIAVNRT-YIVYGLKLGNIRVLNINTALRSLLRGHTQRVTDMAFF 265
Query: 628 PKGTHRLSHLCASGR 672
+ HRL+ GR
Sbjct: 266 AEDVHRLASASVDGR 280
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +1
Query: 448 PALKIAVPPPLILREKAAWNRVCQALKANKINYIHARNVSHGIQIKVATPGDHRTLSAFF 627
P K P L+L + A NR + K+ I N++ ++ + T AFF
Sbjct: 203 PITKYTSDPGLVLGRQIAVNRT-YIVYGLKLGNIRVLNINTALRSLLRGHTQRVTDMAFF 261
Query: 628 PKGTHRLSHLCASGR 672
+ HRL+ GR
Sbjct: 262 AEDVHRLASASVDGR 276
>06_01_0184 + 1433798-1434442
Length = 214
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 482 YFERRQRGTACARPLRPIK*IISMRETSHTVYR*RSQRRGTIG----HSRPFFRKERIGY 649
Y+E+ + T + P + RET H VYR +RRG G R +K RI
Sbjct: 3 YYEQEEYATVTSAPPKRPAGRTKFRETRHPVYR-GVRRRGPAGRWVCEVREPNKKSRIWL 61
Query: 650 HTYALQE 670
T+A E
Sbjct: 62 GTFATAE 68
>01_06_1661 - 38972368-38972391,38972822-38973490
Length = 230
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 448 PALKIAVPPPLILREKAAWNRVCQALKANKINYIHARNV 564
P +A+PPP +R+ WN + A++ H R V
Sbjct: 14 PVRYVALPPPRGVRDGGGWNVLVPESMASEWTVAHVRGV 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.127 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,851,733
Number of Sequences: 37544
Number of extensions: 324756
Number of successful extensions: 995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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