Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2146
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    29   5.2  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = -2

Query: 647 VYNIIYISRKLPVYIIKFIN---------NTELYSVNRLQWSAFDRYELFNSILNFTEES 495
           V+ + +  RK PVYI+ F N             YS   +  S+F       + LN T  S
Sbjct: 31  VFRLAFCKRKNPVYIVSFFNILSDVFQVSAATFYSAPSIITSSFLTSFSKTNTLNTTLSS 90

Query: 494 VHIFIKYF 471
           + +F+ YF
Sbjct: 91  IFLFLWYF 98


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -2

Query: 638 IIYISRKLPVYIIKFINNTELYSVNRLQWSAFDRYELFNSILNFTEESVHIFI 480
           I++IS  L  YI  FI+  +L ++  +Q S    Y    +++ FT +S+HI I
Sbjct: 200 IVFISALL--YIPIFISVRKLVNLQSVQRSKPHNYIFLQTMVVFTLKSIHILI 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,390
Number of Sequences: 27780
Number of extensions: 365762
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)