Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2144
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   8.2  

>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 296 IPRSCVQRLCFILPHLCTYTDIKQLINHRYYTFKPEETPNKQNKTNHTALLLAFPSKSPT 475
           +P+S  +++  ILP      D+ Q +    Y+FKP + P  + +  ++  +L    K P+
Sbjct: 693 VPKSEAEKVYSILP-----IDVPQSVAEETYSFKPSDIPESEAEKIYS--ILPIDVKDPS 745

Query: 476 L-KNSH 490
           L K+ H
Sbjct: 746 LEKDGH 751


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 266  LRFFQWTFWRIPRSCVQRLCFILPHLCTYTDIKQLINHRYYTFKPEETPNKQNKT 430
            L + Q  F RI ++   ++C +      + DI    + ++Y  + E+  N   KT
Sbjct: 1420 LNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKT 1474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,845
Number of Sequences: 5004
Number of extensions: 70753
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)