Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2144
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical ...    31   1.1  
U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    29   3.3  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    29   3.3  
AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear recep...    29   3.3  
AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related p...    29   3.3  

>AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical
           protein Y105C5A.11 protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 732 IFEITPLAKVAPPNW*---LLHECFFIHNHCCLPLPSISMVHYCFSSLTAVLLRI 577
           I  +TPL  V  P +    +L + +F+ NH CL   ++S +   F+ +T V+  +
Sbjct: 94  IIYMTPLCPVLSPFFFTPSILTKLYFLLNHYCLAFKTLSQIAISFNRMTCVIFPV 148


>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 732 IFEITPLAKVAPPNW*---LLHECFFIHNHCCLPLPSISMVHYCFSSLTAVLLRI 577
           I  +TPL     P +    +L + +F+ NH CL   ++S +   F+ +T V+  +
Sbjct: 94  IIYMTPLCPALSPFFFTPSILTKLYFLLNHYCLAFKTLSQIAISFNRMTCVIFPV 148


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 732 IFEITPLAKVAPPNW*---LLHECFFIHNHCCLPLPSISMVHYCFSSLTAVLLRI 577
           I  +TPL     P +    +L + +F+ NH CL   ++S +   F+ +T V+  +
Sbjct: 94  IIYMTPLCPALSPFFFTPSILTKLYFLLNHYCLAFKTLSQIAISFNRMTCVIFPV 148


>AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-101 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 442 FTPRVSVKKSDVKKLALNTPIWLRKYTVRSMPSTIEHWRKVT 567
           + P+ S+K++   K  LN PI+L KY + S   T    R +T
Sbjct: 154 YLPKRSLKEALCSKSLLNDPIFLSKYALPSSKHTYTSLRFIT 195


>AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical
           protein H12C20.6a protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 442 FTPRVSVKKSDVKKLALNTPIWLRKYTVRSMPSTIEHWRKVT 567
           + P+ S+K++   K  LN PI+L KY + S   T    R +T
Sbjct: 145 YLPKRSLKEALCSKSLLNDPIFLSKYALPSSKHTYTSLRFIT 186


>AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related
           protein 1 protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 350 YTDIKQLINHRYYTFKPEETP--NKQNKTNHTALLLAFPSKSP 472
           Y DI  L + RY TFK ++T   +K  + NH   L++F  K P
Sbjct: 291 YNDIWSLPHWRYSTFKRDQTEIFHKILQLNHLFYLVSFGLKKP 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,432,812
Number of Sequences: 27780
Number of extensions: 401400
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)