Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2144
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    28   0.13 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.5  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 785 FCNSCIHITLLVVLPYCG 838
           FC+S I I +++ LP+CG
Sbjct: 13  FCHSIIQIPVIIQLPFCG 30


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 782 SFCNSCIHITLLVVLPYCG 838
           +FC +CIH T+  VL + G
Sbjct: 33  AFCRNCIHPTVFSVLFWLG 51


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 782 SFCNSCIHITLLVVLPYCG 838
           +FC +CIH T+  VL + G
Sbjct: 481 AFCRNCIHPTVFSVLFWLG 499


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
 Frame = +2

Query: 377 HRYYTFKPEETPNKQNKTNHTALLLAFPSKSP-TLKNSH*TH-----RSG*E-SIPCGPC 535
           H  +T  P   P   +  + T  L     + P TL  S+ ++      SG + + PC P 
Sbjct: 338 HGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPS 397

Query: 536 HPRSNTGEKSHVVAILSSTAVND 604
            PR   G  + V+   +S+  +D
Sbjct: 398 PPRGPGGVPTSVIQAATSSVSDD 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,219
Number of Sequences: 438
Number of extensions: 4675
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)