Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2143
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    29   0.54 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   1.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   2.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   8.8  

>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 538 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPGSPK 642
           V+  PND     P    P P P++K++ R P  P+
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPR 43


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 523  PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPGSPKTNEPTSQREGL 675
            PA+ +  + PN  T     A  P+P P L +E  +   P   EP++Q   L
Sbjct: 1008 PARQKFARPPNIET-----APIPRPLPNLPMEYNDHTLPSPKEPSNQASNL 1053


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 572 TLMPKRRNRNPNSSSKYETPDPLRRTNQPLNVKDLETRTSQSDKSQGAT--TPKTIS 736
           TL+P++R R   S++   T  P+R +    N+  L          Q AT  TP T S
Sbjct: 482 TLLPRKRGRPRKSANISVTSSPIRPSKNENNLPSLAISPVSEGFIQNATISTPSTSS 538


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 22  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEKREMS 135
           +++G  ++ IQI +  YH+A   SCE   V G  E  E S
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGS 558


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 427 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 320
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 553 NDLTHHNPHAE--APKPKPELKLEIRNPGSPKTNEP 654
           +++TH NP+     P P P+ K++   P  P    P
Sbjct: 357 SEMTHKNPNLRKTGPTPGPKPKIKSSAPSKPAETAP 392


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +2

Query: 599 NPNSSSKYETPDPLRRTNQPLN----VKDL--ETRTSQSDKSQGAT 718
           NPNSS +YET  P      PLN     K L  E   +Q D++ G T
Sbjct: 158 NPNSSKEYET-IPTVENRHPLNKLSKTKTLAYEETINQLDETPGGT 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,477
Number of Sequences: 5004
Number of extensions: 62846
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)