Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2143
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 32 0.57
05_07_0009 - 27015346-27015705,27016552-27016676,27016778-270168... 31 1.3
08_02_1522 + 27651983-27652690 30 1.7
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 30 1.7
08_01_0191 + 1590948-1591607,1591694-1592176,1592449-1592451,159... 30 2.3
02_05_0930 - 32801737-32801936,32802038-32802107 29 4.0
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 29 5.3
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 29 5.3
02_01_0189 - 1273313-1274157,1274595-1275549 29 5.3
08_02_1271 - 25762750-25764276 28 7.0
03_06_0391 - 33577872-33578093,33578556-33579218 28 9.2
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669... 28 9.2
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 28 9.2
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 587 RRNRNPNSSSKYETPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTIS 736
RRN + SS Y T + RR + +N+K LE S K+ A K++S
Sbjct: 259 RRNHSSPVSSHYYTDESGRRNSSAVNMKSLEHSPSMGCKTPPAVPRKSMS 308
>05_07_0009 -
27015346-27015705,27016552-27016676,27016778-27016853,
27016923-27017105,27018000-27018077,27018159-27018239,
27018347-27018412,27018491-27018556,27019126-27019176,
27019286-27019378,27019498-27019625,27019713-27019851,
27021039-27021136,27021332-27021401,27021565-27021654
Length = 567
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 517 FQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPGSPKTN-EPTSQREGLRDQNLT 693
++P + P+ + P E P P P + + P PKT T GL D N +
Sbjct: 330 YKPEEQEEDSVPDPVEEEKPPVEEPVPVPPVTEAVSPPPPPKTKVADTGDLLGLNDPNPS 389
Query: 694 V 696
V
Sbjct: 390 V 390
>08_02_1522 + 27651983-27652690
Length = 235
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 160 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQGYL 339
A ++S +T++ I G L D YCS E C P N VC+ G EC L
Sbjct: 27 ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83
Query: 340 LDL 348
LD+
Sbjct: 84 LDM 86
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +1
Query: 532 NRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPGSPKTNEPTSQREGLRDQNLTVG*KSR 711
+R+ + P +T P P PK + +P +P +EP QR+ R + K R
Sbjct: 65 SRLLETPTKVTSETPVKPTPTPKRKRAAPSPSPKTPTQSEPKRQRQRQRQRQQPKKPKKR 124
Query: 712 RNHAK 726
+ K
Sbjct: 125 AYYRK 129
>08_01_0191 +
1590948-1591607,1591694-1592176,1592449-1592451,
1592555-1592992
Length = 527
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 66 IIPQCLCLFLRKCTRCFREERDVGIRVCPDARWRRLRSNHPGR 194
+IP CLC+ L + ++++ G R D RR+R+ P R
Sbjct: 6 LIPLCLCILLLRGASAVSDQQEAGRRDSCDRIDRRIRALEPTR 48
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 247 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 330
T + C V N+ + DSGLCV CQ
Sbjct: 27 TAQLETCTEVINREYPTCDSGLCVANCQ 54
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 702 LSDCEVLVSKSFTLRGWFVRLRGSGVSYFELE 607
L+DC VLV +S+ F L+ S VS+F++E
Sbjct: 116 LADCAVLVEQSWWKLLDFALLKRSSVSFFDIE 147
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 702 LSDCEVLVSKSFTLRGWFVRLRGSGVSYFELE 607
L+DC VLV +S+ F L+ S VS+F++E
Sbjct: 125 LADCAVLVEQSWWKLLDFALLKRSSVSFFDIE 156
>02_01_0189 - 1273313-1274157,1274595-1275549
Length = 599
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 148 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 273
VL +AG + DG G +C D +CSPE C P V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585
>08_02_1271 - 25762750-25764276
Length = 508
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 148 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 264
VL +AG + +G G +C DE+CSPE C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487
>03_06_0391 - 33577872-33578093,33578556-33579218
Length = 294
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 568 HNPHAEAPKPKPELKLEIRNPGS 636
H HA P+P+PE+ L++ P +
Sbjct: 3 HEQHAPPPQPEPEVSLQLSAPAT 25
>02_05_0561 -
29965968-29966326,29966375-29966414,29966877-29966951,
29967003-29967107,29967453-29967592,29967691-29967775
Length = 267
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 208 QLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 330
+ C +EY + E+N CA + Y GL EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +1
Query: 478 CRGRVSWRYLKQKFQ-PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPGSPKTNEP 654
CR W Q Q P N+ P P E PKPKP+ S + +
Sbjct: 463 CRSWGIWPPAAQIIQNPLSNKPNPPPATSKQPKPSPEKPKPKPQ-AAATAGAESLQRSTA 521
Query: 655 TSQREGLRDQNL 690
+ +R+ D+NL
Sbjct: 522 SEKRQAKTDKNL 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,908,693
Number of Sequences: 37544
Number of extensions: 460955
Number of successful extensions: 1477
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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