Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2140
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    31   0.20 
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   1.8  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    27   2.4  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 574 QSSGGRKWQGKRRLLGLREHCCRRSWQ 494
           Q  GG  W GK  ++ L EHC R  W+
Sbjct: 56  QLVGGSSWTGKIPVVLLNEHCQRSKWE 82


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 412 VAKIAYSAPVAKIAYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAI-SYHH 567
           V K ++SAPV  +  +    +     PVAK +   AP     F  P    YHH
Sbjct: 38  VKKPSHSAPVTPVRSARSSMEQPTFRPVAKNSVTVAPARAAGFCPPQFEEYHH 90


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 427 YSAPVAKI-AYSAPIAKVAYAAPVAKIAYNSAPLTQVTFSSPAISY 561
           Y+ P+  +    + +  VAY  PV  I   ++PLT  +F++  + Y
Sbjct: 357 YATPLPAVPTVLSGLPSVAYTPPVMHIPTTNSPLTPQSFTNSFLGY 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,851
Number of Sequences: 5004
Number of extensions: 26337
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)