Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2140
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 393 DRLQRSCCQDRLQCSCCQDRLQRTHR*GRIRRPSCQDRLQQCS 521
           DR+ R    D +      DR+ R  R  R+ R    DR  + S
Sbjct: 469 DRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMS 511



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 393 DRLQRSCCQDRLQCSCCQDRLQRTHR*GRIRR 488
           DR+ R    DR+      DR+ R  R  RI R
Sbjct: 388 DRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDR 419



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 393 DRLQRSCCQDRLQCSCCQDRLQRTHR*GRIRRPSCQDRLQQ 515
           DR+ R    DR+      D + RT +  RI R    DR+ +
Sbjct: 484 DRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDR 524



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 393 DRLQRSCCQDRLQCSCCQDRLQRTHR*GRIRRPSCQDRLQQ 515
           DR+ R    DR       DR+ +  R  R+ R +  DR+ +
Sbjct: 496 DRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTNRMDRMNR 536



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 393 DRLQRSCCQDRLQCSCCQDRLQRTHR*GRIRRPSCQDR 506
           DR+ R    DR+      D++ R  R  +I R    DR
Sbjct: 490 DRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDR 527


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 423 RLQCSCCQDRLQRTHR 470
           R+ C+CC  R++R ++
Sbjct: 403 RILCACCPGRVRRRYQ 418


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 24  RRSLPGGCRLGSPSGPDSQNR 86
           R S+  G   GSP  P+S +R
Sbjct: 311 RGSVHNGSNNGSPRSPESNSR 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,527
Number of Sequences: 438
Number of extensions: 2085
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)