Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2139
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1QQE0 Cluster: PE-PGRS family protein; n=1; Mycobacter...    35   2.2  
UniRef50_Q3JRC8 Cluster: Putative uncharacterized protein; n=5; ...    34   2.9  
UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa...    34   2.9  
UniRef50_UPI000065F4A6 Cluster: Homolog of Homo sapiens "Keratin...    33   5.1  
UniRef50_UPI00006CDDA9 Cluster: Insect antifreeze protein; n=1; ...    33   6.8  
UniRef50_Q4UFM9 Cluster: Putative uncharacterized protein; n=2; ...    33   6.8  

>UniRef50_A1QQE0 Cluster: PE-PGRS family protein; n=1; Mycobacterium
           tuberculosis F11|Rep: PE-PGRS family protein -
           Mycobacterium tuberculosis (strain F11)
          Length = 251

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 27/85 (31%), Positives = 38/85 (44%)
 Frame = -2

Query: 700 RTRGKQRGRLSRRWLI*GRGRQRR*EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQG 521
           R R ++RGR SRR     RGRQRR      R W + +R       R G R    R +  G
Sbjct: 162 RQRRQRRGRRSRRQR--RRGRQRRLALRQRRQWRRRRRRPRRSHRRAGRRGWCRRGRGNG 219

Query: 520 LRVRHKLRVVQHAQHKLQQVRQRRK 446
             VR +    +    + ++ R RR+
Sbjct: 220 RIVRQRRXWXRRRXXRTRRQRCRRR 244


>UniRef50_Q3JRC8 Cluster: Putative uncharacterized protein; n=5;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia pseudomallei (strain 1710b)
          Length = 1018

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 27/83 (32%), Positives = 36/83 (43%)
 Frame = -2

Query: 700 RTRGKQRGRLSRRWLI*GRGRQRR*EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQG 521
           R  G +R R +RR    GR  + R    H R     QR S +P+ R  H LC+ R +Q  
Sbjct: 701 RAHGGRRNRGNRRHHRSGRHERARRRPQHAR---ARQRHSRAPRRRRSHVLCRARRQQHE 757

Query: 520 LRVRHKLRVVQHAQHKLQQVRQR 452
            R R       HA+ +    R R
Sbjct: 758 RRRRGPAGRPGHARVRCAGPRDR 780


>UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: Os09g0441900 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 444

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 558 GIGCVRAGVSNRGCV-CGISCEWCSMRSISCNRCGS 454
           G GC   G +  GC  CG  C  C + S  CN CGS
Sbjct: 263 GCGCPSCGCNGCGCPSCG--CNGCGLPSCGCNGCGS 296


>UniRef50_UPI000065F4A6 Cluster: Homolog of Homo sapiens "Keratin
           associated protein 5-9; n=1; Takifugu rubripes|Rep:
           Homolog of Homo sapiens "Keratin associated protein 5-9
           - Takifugu rubripes
          Length = 191

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 501 NLCRTRSPCCLLRPLHNLCPCRSFGD*DIRCPCSQLRSC 617
           +LCR  SPCC L P   L  C S        PC  L SC
Sbjct: 144 SLCRGLSPCCSLAPCRGLSLCHSL------IPCRSLASC 176


>UniRef50_UPI00006CDDA9 Cluster: Insect antifreeze protein; n=1;
            Tetrahymena thermophila SB210|Rep: Insect antifreeze
            protein - Tetrahymena thermophila SB210
          Length = 3784

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 513  CGISCEWCSMRSISCNRCGSGVSRYRSDS 427
            C  +C+ C     SC +C SG  RY SDS
Sbjct: 1781 CDYTCKACLGSKTSCTKCDSGAYRYPSDS 1809


>UniRef50_Q4UFM9 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 1506

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 558 GIGCVRAGVSNRGCVCGISCEWCSMRSISCNRCGSGVSR 442
           G  C  AG   + C+C I CE C  +   C+ C     +
Sbjct: 831 GCSCDCAGTPKKCCICCICCEACQTKKGGCDCCNGNTGK 869


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 411,669,419
Number of Sequences: 1657284
Number of extensions: 5841691
Number of successful extensions: 16865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16775
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)