Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2139
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0172 + 11473892-11474896                                         29   4.7  
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    28   8.3  

>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 615 MSVTGYRGSVCLSHQRSGMGIGCVRAGVSNRGCVCGISCEW 493
           ++V G+  S C +H  S  G G V   V +    C   C W
Sbjct: 169 VAVEGFCSSACGAHGSSAPGGGAVHVWVGDASAQCPGRCAW 209


>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 286 RRLNKKLEHMPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSMQHTL 149
           R +N+ LEHM +  +R +LSR  + +  + V S  S    S   TL
Sbjct: 316 RIMNEMLEHMDAYYLRRILSRCPEQLKQKQVNSDSSDKKDSPLQTL 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,063,017
Number of Sequences: 37544
Number of extensions: 187110
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)