Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2139
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 29 4.8
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 29 4.8
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8) 28 8.4
SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19) 28 8.4
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 28 8.4
SB_23603| Best HMM Match : PH (HMM E-Value=1e-19) 28 8.4
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 34.3 bits (75), Expect = 0.097
Identities = 28/88 (31%), Positives = 45/88 (51%)
Frame = -2
Query: 700 RTRGKQRGRLSRRWLI*GRGRQRR*EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQG 521
R R +QR R +R R RQR+ ++ +R Q QR ++RH R + + ++Q
Sbjct: 5 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQR---QRQRQRQRQRQRHRQRQRQRQRQRQR 61
Query: 520 LRVRHKLRVVQHAQHKLQQVRQRRKSLQ 437
R R + R Q Q + Q+ RQR++ Q
Sbjct: 62 QRQRQRQRQRQR-QRQRQRQRQRQRQRQ 88
Score = 33.1 bits (72), Expect = 0.22
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = -2
Query: 700 RTRGKQRGRLSRRWLI*GRGRQRR*EKLHERN-WLQGQRMS*SPKERHGHRLCKGRSKQQ 524
R R +QR R +R R RQR+ ++ +R+ Q QR ++R R + + ++Q
Sbjct: 17 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQ 76
Query: 523 GLRVRHKLRVVQHAQHKLQQVRQRRKSLQER 431
R R + R Q + + Q++RQR++ Q++
Sbjct: 77 RQRQRQRQRQRQRLRQR-QRLRQRQRQRQQQ 106
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/90 (27%), Positives = 46/90 (51%)
Frame = -2
Query: 700 RTRGKQRGRLSRRWLI*GRGRQRR*EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQG 521
R R +QR R +R R RQR+ ++ +R Q QR ++R R + + ++Q
Sbjct: 13 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQR---QRQRHRQRQRQRQRQRQRQRQRQRQR 69
Query: 520 LRVRHKLRVVQHAQHKLQQVRQRRKSLQER 431
R R + R Q + + +Q ++R+ L++R
Sbjct: 70 QRQRQRQRQRQRQRQRQRQRLRQRQRLRQR 99
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 289 QRRLNKKLEHMPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
+RR + P +V M +RLV M +RLV M +RL M
Sbjct: 840 KRRGGRSHARNPCTVVNDMCTRLVNDMCTRLVNGMCTRLVNDM 882
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 858 MCTRLVNDMCTRLVNGMCTRLVNDMCTRLVNDM 890
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 874 MCTRLVNDMCTRLVNDMCTRLVNGMCTRLVNDM 906
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 882 MCTRLVNDMCTRLVNGMCTRLVNDMCTRLVNDM 914
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 898 MCTRLVNDMCTRLVNDMCTRLVNGMCTRLVNGM 930
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 906 MCTRLVNDMCTRLVNGMCTRLVNGMCTRLVSDM 938
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 954 MCTRLVNDMCTRLVNDMCTRLVNDMCTRLVNDM 986
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 866 MCTRLVNGMCTRLVNDMCTRLVNDMCTRLVNGM 898
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 890 MCTRLVNGMCTRLVNDMCTRLVNDMCTRLVNGM 922
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 914 MCTRLVNGMCTRLVNGMCTRLVSDMCTRLVNDM 946
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL M
Sbjct: 946 MCTQLVNGMCTRLVNDMCTRLVNDMCTRLVNDM 978
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M ++L M
Sbjct: 962 MCTRLVNDMCTRLVNDMCTRLVNDMCTQLVNGM 994
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M ++L M
Sbjct: 922 MCTRLVNGMCTRLVSDMCTRLVNDMCTQLVNGM 954
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 259 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 161
M ++LV M +RLV M +RLV M +RL +
Sbjct: 986 MCTQLVNGMCTRLVNDMCTRLVNDMCTRLVNDV 1018
>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1452
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 535 SKQQGLRVRHKLRVVQHAQHKLQQVRQRRKSLQER 431
+++Q R R + V+ Q K Q QRRKSLQ+R
Sbjct: 312 TEEQRARQRQRDLVLTEEQRKKQTKSQRRKSLQQR 346
>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = -2
Query: 646 RGRQRR*EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVR--HKLRVVQHAQHK 473
+ RQR + ER + +++ K R G ++ KGR ++G + R K+R V+ + K
Sbjct: 37 QNRQRNQAEYSERKERKVRKVRKERKVRKGRKVRKGRKVRKGRKERKGRKVRKVR-KERK 95
Query: 472 LQQVRQRRKSLQER 431
++ R+ RK +ER
Sbjct: 96 GRKGRKERKVRKER 109
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 568 ERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRR 449
E G R+ K S Q ++ RHK QH Q K +V QRR
Sbjct: 1589 EEAGRRMKKKESFQ--IKQRHKPARAQHGQPKRSKVHQRR 1626
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -2
Query: 625 EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRRK 446
E+ H+ N + R + + + L + R +QQ RH+ + Q Q + Q+++QRR+
Sbjct: 207 EQWHQDNRERYDRREKAAQRQQQQHLQQHRQQQQQRLDRHQQQQGQQQQQQQQRLQQRRQ 266
Query: 445 SLQER 431
L+ER
Sbjct: 267 -LRER 270
>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
Length = 804
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 531 LLRPLHNL-CPCRSFGD*DIRCPCSQLRSCS 620
L R LH L C C + D D+ C C +L C+
Sbjct: 184 LTRVLHQLLCVCTTCCDPDLLCDCMELCKCA 214
>SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
Length = 241
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 571 KERHGHRLCKGRSKQQGLRVRHK 503
K H R+CK +SK Q +V+HK
Sbjct: 188 KLHHWERVCKSKSKTQPSKVQHK 210
>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
Length = 1243
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = -2
Query: 598 QGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRRKSLQER 431
+GQ + K + + + +Q+ R + + + +QH + LQQ RQ+R+ LQ++
Sbjct: 237 EGQAIHSEEKPKMNLQYQQQPQQQRQQRQQLQQQQIQHHKQHLQQQRQQRQQLQQQ 292
>SB_23603| Best HMM Match : PH (HMM E-Value=1e-19)
Length = 274
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 303 QELLRPCRRRLSTHR*GRCTRSILR 377
+E+L+ CRRRLS+ G CT +R
Sbjct: 227 KEVLQKCRRRLSSSNRGSCTFEEIR 251
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/79 (21%), Positives = 41/79 (51%)
Frame = -2
Query: 640 RQRR*EKLHERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQV 461
+Q++ +LH+++ L + +++H H+ QQ + + + + Q Q + QQ
Sbjct: 283 QQQQQHQLHQQHQLHQHQQQHQYQQQHQHQ--HQHQHQQQQQQQQQQQQQQQQQQQQQQQ 340
Query: 460 RQRRKSLQER*FW*GEEHH 404
+Q+++ LQ++ +HH
Sbjct: 341 QQQQQQLQQQQQQQQHQHH 359
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.128 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,223
Number of Sequences: 59808
Number of extensions: 218686
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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