Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2139
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF175223-1|AAD52614.1| 3469|Drosophila melanogaster SANT domain ...    29   8.1  
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    29   8.1  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    29   8.1  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    29   8.1  

>AF175223-1|AAD52614.1| 3469|Drosophila melanogaster SANT domain
            protein SMRTER protein.
          Length = 3469

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = -2

Query: 616  HERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRRK 446
            H+++ +Q Q+     +++H H L + R  Q+ +R R + R  +  + + ++ R+R +
Sbjct: 2703 HQQHQVQQQQQQ-QQQQQHNHALERDREMQERMRERDREREREREREQRERERERER 2758


>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
            isoform C protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = -2

Query: 616  HERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRRK 446
            H+++ +Q Q+     +++H H L + R  Q+ +R R + R  +  + + ++ R+R +
Sbjct: 2838 HQQHQVQQQQQQ-QQQQQHNHALERDREMQERMRERDREREREREREQRERERERER 2893


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
            isoform B protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = -2

Query: 616  HERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRRK 446
            H+++ +Q Q+     +++H H L + R  Q+ +R R + R  +  + + ++ R+R +
Sbjct: 2838 HQQHQVQQQQQQ-QQQQQHNHALERDREMQERMRERDREREREREREQRERERERER 2893


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
            isoform A protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = -2

Query: 616  HERNWLQGQRMS*SPKERHGHRLCKGRSKQQGLRVRHKLRVVQHAQHKLQQVRQRRK 446
            H+++ +Q Q+     +++H H L + R  Q+ +R R + R  +  + + ++ R+R +
Sbjct: 2838 HQQHQVQQQQQQ-QQQQQHNHALERDREMQERMRERDREREREREREQRERERERER 2893


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.316    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,335
Number of Sequences: 53049
Number of extensions: 306560
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)