Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2138
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     29   4.6  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    28   6.1  

>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 119 RRSTEKGHTIDADDDE-VNDAISCVVHW 199
           RR  +KG  ID+ DDE ++DA+ C + W
Sbjct: 533 RRKQKKG--IDSSDDEMIDDAVDCGIDW 558


>02_05_0484 - 29401195-29401404,29401572-29401755,29401866-29403973,
            29404320-29404403,29404507-29404777,29404864-29405117,
            29405513-29405722,29406357-29406503
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 30   VGIGSSRYTKLLRVK*TEEGE--ETHSRKYSLGGPRKKVTQSMPMMTK 167
            V +G +R  +      +E+ E  E HS   SLGG R+K  Q+   +T+
Sbjct: 964  VTVGGTRKRRFAGATISEQDEDSEAHSESVSLGGQRRKRRQTAAAVTQ 1011


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,578
Number of Sequences: 37544
Number of extensions: 287870
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)