Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2138
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    42   6e-04
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    33   0.28 
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    33   0.28 
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    29   6.0  

>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p protein.
          Length = 906

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
 Frame = +2

Query: 167  VNDAISCVVHWFRINNLLLNSKKTKCIKFTLKCIKPSLNVRQVDSDIIXXXXXXXXXXXX 346
            + + ++ +  W +   L +N +KT    FTLK + P     +++  I+            
Sbjct: 698  LQEYLTTLAAWCKRWILKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPSQAKYL--- 754

Query: 347  XXXGITVDSKLQWGPHIHXXXXXXXXXXXXXXXIRMLTNADTARLVYFSYFHSVMS---Y 517
               GIT+D +L +GPH+                +    +  T R     Y H V     Y
Sbjct: 755  ---GITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIWLY 811

Query: 518  GILLWGNAA--DVETIFILQKRAIRAI 592
            GI +WG AA  +   I +LQ RA+RAI
Sbjct: 812  GIQIWGIAAKSNYNRIQVLQNRAMRAI 838


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
            D.melanogaster white-one mutant DNA with Doc retroposon,
            inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 5/143 (3%)
 Frame = +2

Query: 179  ISCVVHWFRINNLLLNSKKTKCIKFTLKCIKPSLNVRQVDSDIIXXXXXXXXXXXXXXXG 358
            ++ V  W     + +N +K K + FTL         +Q    ++               G
Sbjct: 689  LTSVERWLADWRISINVQKCKQVTFTLN--------KQTCPPLVLNNICIPQADEVTYLG 740

Query: 359  ITVDSKLQWGPHIHXXXXXXXXXXXXXXXI---RMLTNADTARLVYFSYFHSVMSYGILL 529
            + +D +L W  HI                +   R   + +   L+Y S    + +YG  L
Sbjct: 741  VHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSEL 800

Query: 530  WGNA--ADVETIFILQKRAIRAI 592
            WGNA  ++++ I   Q R +R I
Sbjct: 801  WGNASRSNIDIIQRAQSRILRII 823


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p protein.
          Length = 888

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 5/143 (3%)
 Frame = +2

Query: 179  ISCVVHWFRINNLLLNSKKTKCIKFTLKCIKPSLNVRQVDSDIIXXXXXXXXXXXXXXXG 358
            ++ V  W     + +N +K K + FTL         +Q    ++               G
Sbjct: 689  LTSVERWLADWRISINVQKCKQVTFTLN--------KQTCPPLVLNNICIPQADEVTYLG 740

Query: 359  ITVDSKLQWGPHIHXXXXXXXXXXXXXXXI---RMLTNADTARLVYFSYFHSVMSYGILL 529
            + +D +L W  HI                +   R   + +   L+Y S    + +YG  L
Sbjct: 741  VHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSEL 800

Query: 530  WGNA--ADVETIFILQKRAIRAI 592
            WGNA  ++++ I   Q R +R I
Sbjct: 801  WGNASRSNIDIIQRAQSRILRII 823


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = +2

Query: 356 GITVDSKLQWGPHIHXXXXXXXXXXXXXXXI---RMLTNADTARLVYFSYFHSVMSYGIL 526
           G+ +D +L W  HI                +       + D   L+Y S    + +YG  
Sbjct: 742 GVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYGSQ 801

Query: 527 LWGNA--ADVETIFILQKRAIRAI 592
           LWGNA  ++++ I   Q + +R I
Sbjct: 802 LWGNASNSNIDIIQRAQSKILRTI 825


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,307,712
Number of Sequences: 53049
Number of extensions: 512925
Number of successful extensions: 1133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)