Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2137
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 175 4e-45
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 29 0.34
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 27 1.8
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 26 3.2
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 5.6
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 7.3
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 7.3
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 7.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.3
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 9.7
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.7
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 175 bits (426), Expect = 4e-45
Identities = 77/131 (58%), Positives = 97/131 (74%)
Frame = +2
Query: 131 DCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSNGKDYLLCDYNR 310
D ALDL+RRL P+ I KNL ++ + P + D LLS VDQPLK+ +G YLLCD+NR
Sbjct: 5 DAALDLLRRLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCDFNR 64
Query: 311 DGDSYRSSWSNTYDPPLDDGFMPSERLRKLEIDANLAFDQYREMYFEGGVSSVYLWDMDH 490
DGDSYRS WSN YDPPL+DG + ++R+RKLE+ N A Y ++Y+EGGVSSVYLWD D
Sbjct: 65 DGDSYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDD 124
Query: 491 GFAGVILIKKA 523
+AG +LIKKA
Sbjct: 125 SYAGAVLIKKA 135
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 191 DLIDLVPSMCDDLLSLVDQPLKIAQDRSNGKDYLLCDYNRDGDSYRSSWSNTYDPPLDDG 370
D+ + VP DD + P + R + D Y+R GDSYRS+ S +D +D
Sbjct: 225 DIYNDVPIYADDEPEDIWGPSSKSTKRRDSADRS-SSYSRRGDSYRSNRSRAHDDDDEDD 283
Query: 371 F 373
+
Sbjct: 284 Y 284
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 55 NYTTLIILVLIVNPNNKTSNE*PTNGLCTGLDAEAAPSADRKEFNRFDRPR 207
N + ++ +L+ + TS+E T G+ T + D K FN D P+
Sbjct: 99 NPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPK 149
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 176 EKNLTDLIDLVPSMCDDLLSLVDQPLKI-AQDRSNGKDYLLCDYNRDGDSYRSSWSNT 346
EKN+ L L+P D ++L + L I ++ +N + D+ +D D +S +S T
Sbjct: 22 EKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAHYAVQIDFFKDIDVEKSKYSVT 79
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.6
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 284 DYLLCDYNRDGDSYRSSWS---NTYDPPLDDGFMPSERLRKLEIDANLAFDQYREMYFEG 454
DYLL NR S S WS N D L + + +L K D N + + Y G
Sbjct: 240 DYLLFHLNRIDPSLYSKWSLPTNDVDEFLQNTAYKARKLTKGGFDENFVSNYVIQQYRIG 299
Query: 455 GVSSVYLWDMD 487
+ L +D
Sbjct: 300 RLGRFQLDTID 310
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 290 NSLSRCYDP-EQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEGAASASSPVHN 132
+SLSR ++S D+L + S + + +L +SF S + ASAS P +N
Sbjct: 681 SSLSRAPSTSKKSHFEDILGLFASPAPSAQPVDSLASSFASLDFNASASQPSNN 734
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/66 (19%), Positives = 27/66 (40%)
Frame = -1
Query: 338 TKKTYRSHRRDCNRIINSLSRCYDPEQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEGA 159
++ T + + ++I+ CYDP A L + H R + + + + A
Sbjct: 39 SENTLNNESHEMSQILKKSGLCYDPRMRFHA-TLSEVDDHPEDPRRVLRVFEAIKKAGYV 97
Query: 158 ASASSP 141
++ SP
Sbjct: 98 SNVPSP 103
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 505 YSCKSMIHIPKVD*ANATFKVHLSILIKGKVGIYF*FSQAFRGH 374
Y +SM+ +PKVD + + S I G YF F Q F H
Sbjct: 77 YEFQSMVSLPKVDRVSKFLSDNES--ISQTSGDYFIFLQRFYAH 118
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 152 RRLPPQQIEKNLTDLIDLVPSMCDDLLSLV-DQPLKIAQDRSNGKD 286
R PP+ E + ++D+VP DL S QPL + N K+
Sbjct: 944 RSTPPKIHEVGVNKMLDVVPKEKRDLNSFFPKQPLVVQSTDKNKKE 989
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 350 RKYSTKKTYRS-HRRDCNRIINSLSRCYDPEQSLEADLLMIIGRHTYSERGLSNL 189
+K S K T + H + + IIN Y +++ ADL +G++ + +RG + L
Sbjct: 697 KKNSGKLTIEAEHVSNDSPIINEAPFDYKNQKNFIADLDSDVGKNKFGKRGFNPL 751
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -3
Query: 420 ARLASISSFLKRSEGMNPSSNGG 352
ARLASISSF K S MN +S G
Sbjct: 691 ARLASISSFAK-SAVMNSTSASG 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,103
Number of Sequences: 5004
Number of extensions: 45556
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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