Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2137
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0157 + 14947935-14948210,14948448-14948518,14948891-149490... 128 3e-30
08_02_0703 - 20188489-20190246 32 0.26
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 31 0.46
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 31 0.61
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 3.2
05_04_0035 + 17378541-17381276 29 3.2
06_02_0201 - 12960493-12960606,12960727-12960853,12961100-129612... 28 4.3
09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341 28 5.6
01_06_1189 + 35241254-35241928 28 5.6
10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714 27 9.9
>03_03_0157 +
14947935-14948210,14948448-14948518,14948891-14949004,
14949160-14949242,14949329-14949390,14949495-14949614,
14950398-14950493,14950613-14950696
Length = 301
Score = 128 bits (309), Expect = 3e-30
Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = +2
Query: 257 IAQDRSNGKDYLLCDYNRDGDSYRSSWSNTYDPPLDDGFMPSERLRKLEIDANLAFDQYR 436
+ D+ + K+Y+LC+YNRD DSYRS WSN YDPPL+DG +PSE +R LE++AN F YR
Sbjct: 93 VCMDKESVKEYILCEYNRDADSYRSPWSNKYDPPLEDGTVPSEEMRNLEVEANDVFSVYR 152
Query: 437 EMYFEGGVSSVYLW-DMDHGFAGVILIKKAGDG 532
+ Y+EGG+SSVY+W D D F LIKK G+G
Sbjct: 153 DQYYEGGISSVYIWEDEDESFIACFLIKKDGEG 185
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 128 MDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKI 259
M+ A+DLMRR+PP + E L L+ L+P DLLS VD PL++
Sbjct: 1 MEAAMDLMRRMPPGRAETALNALLSLIPDHSLDLLSQVDLPLQV 44
>08_02_0703 - 20188489-20190246
Length = 585
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 242 LLMIIGRHTYSERGLSNLLNSFRSAEGAASASSPVH 135
L +++G SER L + +NS R+ G A +S PVH
Sbjct: 522 LRVVLGLGDDSERDLPDFMNSARNVNGIAGSSVPVH 557
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 149 MRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIA 262
+RR+ Q +++NLT+ ++L P + D +LS LK A
Sbjct: 461 VRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAA 498
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 31.1 bits (67), Expect = 0.61
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 203 LVPSMCDDLLSLVDQPLKIAQDRSNGKDYLLCDYNRDGDSYRSSWSNTYDP 355
L PS + L LVD L++A + SNG+ L C +S SNT DP
Sbjct: 2444 LSPSYVPEELVLVDIALRVANNSSNGEISLSCFDPEALSILQSLGSNTTDP 2494
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 278 GKDYLLCDYNRDGDSYRSSWSNTYDPPLDDGFMPSE 385
G D+ +N+ D SW Y PLDD F+ SE
Sbjct: 219 GLDFSPKHFNQPPDGISFSWYGHYRGPLDDLFLNSE 254
>05_04_0035 + 17378541-17381276
Length = 911
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 125 QMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSNG 280
+MD AL + R+P ++I+ N T LV ++C + +D+ ++ D + G
Sbjct: 488 RMDDALKVYGRMPDKEIKPNTTTFETLVNALCKE--GDLDKARELVSDMAKG 537
>06_02_0201 -
12960493-12960606,12960727-12960853,12961100-12961276,
12961864-12961975,12964141-12964144
Length = 177
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +2
Query: 137 ALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSNGKDY 289
A D++ +L + + + +D+V ++CDD + + + I + R+N +Y
Sbjct: 126 ANDILEQLATRVLHEEHQVYVDVVTALCDDRIVWREDGVPIIRSRTNPDEY 176
>09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341
Length = 353
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 410 HLFLVFSSVQRA*THHLMVGRKYSTKKTYRSHR 312
+L L F+S + A H+ RK+S KK RSHR
Sbjct: 129 YLTLTFNSEEEARAHY---NRKFSLKKFLRSHR 158
>01_06_1189 + 35241254-35241928
Length = 224
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 462 LTPPSKYISRY*SKARLASISSFLKRSEGMNPSSNGG 352
+TPP Y+ R+ KA A+ ++ +R +G + GG
Sbjct: 85 ITPPPSYLLRHGGKAGAAAPAAPRRRPQGKGKAKTGG 121
>10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714
Length = 193
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 242 DQPLKIAQDRSNGKDYLLCDYNRDGDSYRSSWSNTYDPPLDDGFMPSER-LRKLEIDANL 418
DQ + A+ + G +CD + G + +S+T P L + +PS++ L LE+D +
Sbjct: 102 DQQM-FARCKIPGASSTICDNGQAGHGTSAGYSSTDSPVLVNCRLPSKKCLTSLEVDRGI 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,786
Number of Sequences: 37544
Number of extensions: 284361
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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