Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2137
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...   240   4e-64
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...   240   4e-64
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...   240   4e-64
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z81059-2|CAB02926.1|  240|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score =  240 bits (588), Expect = 4e-64
 Identities = 106/145 (73%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
 Frame = +2

Query: 113 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSNGKDYL 292
           M +QQ+DCALDLMRRLPPQ  +KNLTDLIDL P + DDLLS +DQPLKIA DR  GK YL
Sbjct: 1   MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYL 60

Query: 293 LCDYNRDGDSYRSSWSNTYDPPLDDGFMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 472
           LCDYNRDGDSYRS WSNTYDPPL+DG +PSE+ RK+EI+AN AF+ YR++YFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVY 120

Query: 473 LWDMDH-GFAGVILIKKAGDGFQKI 544
            WD+D+ GFAG++LIKK GDG + I
Sbjct: 121 FWDLDNGGFAGIVLIKKEGDGAKNI 145


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score =  240 bits (588), Expect = 4e-64
 Identities = 106/145 (73%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
 Frame = +2

Query: 113 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSNGKDYL 292
           M +QQ+DCALDLMRRLPPQ  +KNLTDLIDL P + DDLLS +DQPLKIA DR  GK YL
Sbjct: 1   MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYL 60

Query: 293 LCDYNRDGDSYRSSWSNTYDPPLDDGFMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 472
           LCDYNRDGDSYRS WSNTYDPPL+DG +PSE+ RK+EI+AN AF+ YR++YFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVY 120

Query: 473 LWDMDH-GFAGVILIKKAGDGFQKI 544
            WD+D+ GFAG++LIKK GDG + I
Sbjct: 121 FWDLDNGGFAGIVLIKKEGDGAKNI 145


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score =  240 bits (588), Expect = 4e-64
 Identities = 106/145 (73%), Positives = 124/145 (85%), Gaps = 1/145 (0%)
 Frame = +2

Query: 113 MSDQQMDCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSNGKDYL 292
           M +QQ+DCALDLMRRLPPQ  +KNLTDLIDL P + DDLLS +DQPLKIA DR  GK YL
Sbjct: 1   MGEQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYL 60

Query: 293 LCDYNRDGDSYRSSWSNTYDPPLDDGFMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 472
           LCDYNRDGDSYRS WSNTYDPPL+DG +PSE+ RK+EI+AN AF+ YR++YFEGGVSSVY
Sbjct: 61  LCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVY 120

Query: 473 LWDMDH-GFAGVILIKKAGDGFQKI 544
            WD+D+ GFAG++LIKK GDG + I
Sbjct: 121 FWDLDNGGFAGIVLIKKEGDGAKNI 145


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 371 THHLMVGRKYSTKKTYRSHRRDCNRIINSLSRCYDPEQSLEAD 243
           T   +      T  T R H ++C ++I+S+ + +D E+S   D
Sbjct: 109 TRMFLCAMSRGTTSTLRDHSKNCVKMIDSVIKNFDVEKSKRTD 151


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 275 CYDPEQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEGAASASS 144
           C    +S+E  ++ ++   T +  G+++ +NS RSA G+ SA+S
Sbjct: 431 CRQITRSIEK-VIYVVTSITKNGNGVADFINSVRSASGSGSAAS 473


>Z81059-2|CAB02926.1|  240|Caenorhabditis elegans Hypothetical
           protein F11F1.4 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 143 DLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSLVDQPLKIAQDRSN 277
           D++ ++    +E+ L++L DLVP + D+L +L+     + +   N
Sbjct: 125 DILSKVDNLGVEEVLSELNDLVPGLGDELENLISTVFNLIEQLLN 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,823
Number of Sequences: 27780
Number of extensions: 246680
Number of successful extensions: 537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)