Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2137
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.67 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.88 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.2  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 149 MRRLPPQQIEKNLTDLIDL-VPSMCDDLLSLVDQPLKIAQDRSNGKDYLLCD 301
           +R L  + I++  +D+ +L V   C DL S ++  L+  +    GKD L  D
Sbjct: 156 IRTLLDESIQRK-SDITELDVSKRCKDLASFMENLLQETRTPGFGKDVLATD 206


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 457 R*LSLPLGYGSWICRSNINQESWRWV 534
           R + L LG   W CR    QE   WV
Sbjct: 915 RLVELSLGSNPWSCRCKFLQELSSWV 940


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 149 MRRLPPQQIEKNLTDLIDL-VPSMCDDLLSLVDQPLKIAQDRSNGKDYLLCD 301
           +R L  + I++  +D+ +L V   C DL S +   L+  +    GKD L  D
Sbjct: 450 IRTLLDESIQRK-SDITELDVSKRCKDLASFMGNLLQETRTPGFGKDVLATD 500


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 254 KIAQDRSNGKDYLLCDYNRDGDSYRSSWSNTYD 352
           KI    SN  +Y   +YN   ++Y ++++N Y+
Sbjct: 80  KIISSLSN--NYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 254 KIAQDRSNGKDYLLCDYNRDGDSYRSSWSNTYD 352
           KI    SN  +Y   +YN   ++Y ++++N Y+
Sbjct: 80  KIISSLSN--NYKYSNYNNYNNNYNNNYNNNYN 110


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 281 KDYLLCDYNRD 313
           K YL CDY+RD
Sbjct: 41  KLYLFCDYDRD 51


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 338 TKKTYRSHRRDCNRIINSLSRCYDPEQSLEADLLMIIGR-HTYSERGLSN 192
           TK      +R   R+I  +S  +     +    L+I+G  HTYSE G S+
Sbjct: 144 TKPLKYGVKRTPRRMIVYVSLVWLGAACISLPPLLIMGNEHTYSETGPSH 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,783
Number of Sequences: 438
Number of extensions: 2963
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)