Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2136
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RIA7 Cluster: NAD(P)H-dependent glutamate synthase-re...    34   2.4  
UniRef50_Q5VB08 Cluster: NADH-ubiquinone oxidoreductase chain 3;...    33   5.6  

>UniRef50_Q7RIA7 Cluster: NAD(P)H-dependent glutamate
            synthase-related; n=14; Eukaryota|Rep: NAD(P)H-dependent
            glutamate synthase-related - Plasmodium yoelii yoelii
          Length = 2957

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 61   EEDVDTEMAFVRPEGRQRKSCPS*RDKGKKKKVSNSYSKHRNIMASKYQ 207
            +ED D          +++K     R+K KKKK  N+YS H NI+ +KY+
Sbjct: 1518 KEDGDKGYTNSEKRKKKKKEIEKEREKEKKKKTLNAYSMHNNII-NKYK 1565


>UniRef50_Q5VB08 Cluster: NADH-ubiquinone oxidoreductase chain 3;
           n=2; Spadellidae|Rep: NADH-ubiquinone oxidoreductase
           chain 3 - Spadella cephaloptera
          Length = 115

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 230 YISNIPF--N*YLLAIIFLCFEYELLTFFFLPLSR*EGQLFLCL 105
           +IS +PF    +L+A+IFL FE+E+     +PL     Q+FL +
Sbjct: 46  FISRLPFCMKFFLVAVIFLVFEFEVALIIPMPLKFMSIQIFLLI 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,089,189
Number of Sequences: 1657284
Number of extensions: 7217418
Number of successful extensions: 14730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14719
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)