Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2136
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   2.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   9.5  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   9.5  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 483 YYNSTILTLKKLLESLRINGLLRDYK 406
           YYN  + TLKK   ++ I   L+DYK
Sbjct: 551 YYNVVLETLKKSSSNILIMPYLKDYK 576


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 NLICFVNFKYV*IILCTHMDLL 333
           NL  F NF +   + CTH D L
Sbjct: 52  NLCLFSNFSHSCFLFCTHPDTL 73


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 73  DTEMAFVRPEGRQR-KSCPS*RDKGKKKKVSNSYSKHRNIMASKYQLNGIFEMYSTDNYF 249
           D ++A  RP+G Q   S      K KK ++++      N + +KY   GI E+     + 
Sbjct: 243 DLDIANARPQGGQDIMSMMGQLMKPKKTEITDKLRGEINKVVNKYIEQGIAELIPGVLFI 302

Query: 250 **MYIFNLICF 282
             +++ ++ CF
Sbjct: 303 DEVHMLDIECF 313


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 37  DCVKKDIRE--EDVDTEMAFVRPEGRQRKSCPS*RDKGKKKKVSNSYSKHR 183
           D V KD  E  EDV+ ++   + + +  K   +  +  KK+K      KH+
Sbjct: 432 DAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHK 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,420
Number of Sequences: 5004
Number of extensions: 34161
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)