Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2136
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0746 - 31636024-31641396                                         31   0.78 
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524           30   1.0  
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496     29   2.4  
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    27   9.6  

>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  GWTV*KRIYEKRMWIQRWR 88
           GWT+   +  KRMW QRWR
Sbjct: 404 GWTITFSVLYKRMWDQRWR 422


>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
          Length = 427

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 22  KNIWMDCVKKDIREEDVDTEMAFVRPEGRQRKSCPS 129
           KN+W  C+KK +R++ +D        E  +R + P+
Sbjct: 105 KNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPT 140


>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
          Length = 428

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 22  KNIWMDCVKKDIREEDVDTEMAFVRPEGRQRKSCPS 129
           KN+W  C+KK +R++ +D        E  + K+ P+
Sbjct: 105 KNLWNSCIKKKLRQKGIDPNTHKPLAEVDRSKATPT 140


>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 46  KKDIREEDVDTEMAFVRPEGRQRKSCPS*RDKGKKKKVSNSYSKHRNIMASK 201
           K   ++E VD   A   P G  R + P+ + K K+K      SK     ASK
Sbjct: 378 KDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGGGDDSKASGGAASK 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,909
Number of Sequences: 37544
Number of extensions: 169992
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)