Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2136
         (540 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128711-1|BAC87585.1|  206|Homo sapiens protein ( Homo sapiens ...    31   2.6  
AF103284-1|AAD30844.1|  127|Homo sapiens immunoglobulin heavy ch...    29   7.9  

>AK128711-1|BAC87585.1|  206|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46878 fis, clone UTERU3014906. ).
          Length = 206

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
 Frame = -3

Query: 85  PSLYP--HPLLVYPFSHSP 35
           P +YP  HP ++YPF+HSP
Sbjct: 163 PPIYPCIHPSIIYPFTHSP 181


>AF103284-1|AAD30844.1|  127|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 127

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 250 KNNYQLNTFQIFHSTDTYLPLYFCVSNTNC*PSSSYPY--PVRRDSFSSVSLQV*QTPSL 77
           KN + LN   +  + DT   +YFC     C  SS YP+  P  +    +VS    + PS+
Sbjct: 69  KNQFSLNLTSVT-AADT--AMYFCAIREKCPDSSCYPWFDPWGQGLLVTVSSASTKGPSV 125

Query: 76  YP 71
           +P
Sbjct: 126 FP 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,413,914
Number of Sequences: 237096
Number of extensions: 1027501
Number of successful extensions: 1659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)