Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2136
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   3.7  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    27   6.5  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    27   6.5  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      27   6.5  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 154 KVSNSYSKHRNIMASKYQLNGIFEMYSTD 240
           K+ +++ K RNI   KY++ G+F++ + +
Sbjct: 398 KIKDTFVKLRNIRLEKYEIGGVFKVINME 426


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +1

Query: 19  AKNIWMDCVKKDIREEDVDTEMAFVRPEGRQRKSCPS*RDKGKKKKVSNSYSKHRNIMAS 198
           +KN+ +D  KK +  + ++++    R      K C S    G+K  V  S S+ ++   +
Sbjct: 417 SKNLLVDSFKKFV--QGINSKTHVTRIVESLEKCCLSDTPSGRKSNVQPSTSQQQDSAYT 474

Query: 199 KYQLNGIFEMYSTD 240
           K ++  +   YS +
Sbjct: 475 KEEMTTVHNTYSVN 488


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +1

Query: 19  AKNIWMDCVKKDIREEDVDTEMAFVRPEGRQRKSCPS*RDKGKKKKVSNSYSKHRNIMAS 198
           +KN+ +D  KK +  + ++++    R      K C S    G+K  V  S S+ ++   +
Sbjct: 458 SKNLLVDSFKKFV--QGINSKTHVTRIVESLEKCCLSDTPSGRKSNVQPSTSQQQDSAYT 515

Query: 199 KYQLNGIFEMYSTD 240
           K ++  +   YS +
Sbjct: 516 KEEMTTVHNTYSVN 529


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +1

Query: 19  AKNIWMDCVKKDIREEDVDTEMAFVRPEGRQRKSCPS*RDKGKKKKVSNSYSKHRNIMAS 198
           +KN+ +D  KK +  + ++++    R      K C S    G+K  V  S S+ ++   +
Sbjct: 417 SKNLLVDSFKKFV--QGINSKTHVTRIVESLEKCCLSDTPSGRKSNVQPSTSQQQDSAYT 474

Query: 199 KYQLNGIFEMYSTD 240
           K ++  +   YS +
Sbjct: 475 KEEMTTVHNTYSVN 488


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 133 RDKGKKKKVSNSYSKH--RNIMASKYQLNGIFEMYSTDN 243
           RD G        +S+H  ++I  +K+QL  IF  YST N
Sbjct: 148 RDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSN 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,301,992
Number of Sequences: 27780
Number of extensions: 180161
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)