Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2136
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.1  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 280 NKSN*KYTFIKNNYQLNTFQIFHS 209
           N +N KY +  NNY  N  +++++
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 280 NKSN*KYTFIKNNYQLNTFQIFHS 209
           N +N KY +  NNY  N  +++++
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 280 NKSN*KYTFIKNNYQLNTFQIFHS 209
           N +N KY +  NNY  N  +++++
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 280 NKSN*KYTFIKNNYQLNTFQIFHS 209
           N +N KY +  NNY  N  +++++
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYN 115


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 280 NKSN*KYTFIKNNYQLNTFQIFHSTDTYLPLYFCVSNTNC*PSSSYPYPVRRDSF 116
           N +N KY +  NNY  N +   ++ +    LY+ + N    P    P P+   +F
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNC-KKLYYNIINIEQIP-VPVPVPIYCGNF 377


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 247 NNYQLNTFQIFH 212
           NNYQ N   +FH
Sbjct: 16  NNYQSNMTSVFH 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,601
Number of Sequences: 438
Number of extensions: 2646
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)