Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2135
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    28   0.51 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   0.51 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   0.90 
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   6.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.3  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    24   8.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   8.4  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   8.4  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 137 WRIYVVDVYGLQ*PLNTRWAVSSSTHLSNKKKLYKINLKQ-TKGIRPTGDTSKEKQNCYF 313
           W ++  D+Y  +    +  A +  +H+SN +K  ++NL++  K    TG+TS    N  F
Sbjct: 143 WNVFW-DIYNARRGQGSEPAKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSHPYANASF 201


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  YHHPAYFCREAVMRFGLKGGAAVVTIIETLELISQGG 136
           +  P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 294 KNKTVIFI*FRAFSYLSTSKPFLD---FHKSFKTKISQIGP 407
           K + +I +   +F Y  TSKP L+   F  S  ++I+ IGP
Sbjct: 668 KQRAIIKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGP 708


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 269 GFLLFVLSLFYTIFFYCLDEWTSSQPTW 186
           GF  F LSLF+ + FY    +  SQ +W
Sbjct: 40  GFFAF-LSLFHLLEFYITARFQGSQLSW 66


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 304 VLFFL*CVPSRTDSFCLF 251
           ++FFL  VP  T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 202 AHSPPGVKWLLEPIDIYNVNAPPTLR 125
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 253 TNKRNPSDWGHIKGKTKL 306
           ++ R  S WGH+KG T L
Sbjct: 376 SSARGKSIWGHMKGNTLL 393


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 409 AGPIWLILVLNDLWKSRK 356
           +GPIW +   N+ W+SR+
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 208 GRAHSPPGVKWLLEPIDIYN 149
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,419
Number of Sequences: 5004
Number of extensions: 37303
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)