Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2135
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457...    30   0.87 
02_05_1160 + 34580680-34582659                                         28   3.5  
02_02_0652 - 12651163-12653210,12653327-12653627                       27   4.6  
02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112     27   6.1  

>06_03_1339 +
           29445324-29445395,29445487-29445598,29445673-29445756,
           29446156-29446182,29446879-29446966,29447070-29447151,
           29447414-29447434,29448412-29448605,29449419-29449560,
           29449805-29449889,29450123-29450250,29450940-29451032,
           29451095-29451327,29453384-29453564,29454122-29454169
          Length = 529

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 302 FVFPLMCPQSDGFLLFVLSLFYTIFFYCLDEWTSSQP 192
           FV  + CP S   L  ++S+ +  +   +DEW SSQP
Sbjct: 278 FVEFIPCPISQSSLSALMSIDWQSYATAVDEWKSSQP 314


>02_05_1160 + 34580680-34582659
          Length = 659

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 400 IWLILVLNDLWKSRKGLEVDKY-ENARN*IKITVLFFL 290
           +WL+  +++LW  RK L++    E+ +     T+LFFL
Sbjct: 616 VWLLFAISELWLQRKQLKLALLEEHIKVLCNSTMLFFL 653


>02_02_0652 - 12651163-12653210,12653327-12653627
          Length = 782

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 200 SSSTHLSNKKKLYKINLKQTKGI 268
           ++STHL N  KL  + +K TKG+
Sbjct: 240 ANSTHLVNTNKLSMVTVKPTKGL 262


>02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112
          Length = 747

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 200 SSSTHLSNKKKLYKINLKQTKGI 268
           + STHL N  KL  + +K TKG+
Sbjct: 279 AKSTHLVNTNKLSMVKVKPTKGL 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,507,046
Number of Sequences: 37544
Number of extensions: 247981
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)