Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2135
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical ...    28   2.4  
U28729-7|AAO38609.1|  158|Caenorhabditis elegans Phosphodiestera...    27   4.1  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   7.2  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   7.2  
AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical
           protein Y81G3A.1 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 249 KFILYNFFLLLR*VDELTAHLVLSGYWSP*TSTT 148
           +F LY+ F +   +D LTA L   G W P  S T
Sbjct: 185 EFALYHLFEVGNGIDHLTATLPFGGLWIPNRSQT 218


>U28729-7|AAO38609.1|  158|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformf protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 194 AVSSSTHLSNKKKLYKIN--LKQTKGIRPTGDTSKEKQNCYFYLIPSIFI 337
           ++SSS H   +  LY+ +  L++   +RP    S    N + Y+I  IF+
Sbjct: 109 SLSSSVHARRESFLYRASDDLREASSLRPVSRASSIASNEHGYVILYIFL 158


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 11  VHTGRYHHPAYFCR 52
           +HTGRY  P Y CR
Sbjct: 302 IHTGRYSGPTYNCR 315


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 68  NALLLHGRNRQGGGTYPCG 12
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 68  NALLLHGRNRQGGGTYPCG 12
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  REAVMRFGLKGGAAVVTIIETLELISQG 133
           R AV++FG+     +V IIET+  +S G
Sbjct: 136 RTAVVKFGMHFDKVMVAIIETMVFLSLG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,093
Number of Sequences: 27780
Number of extensions: 212673
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)