Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2135
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 256 NKRNPSDWGHIKGKTKLLFLFNSEHFHIYLPLNLSWTSINHSRPKLAKSVQ 408
           +KR P+    ++GK K     NSE+F I+    + +  +   +  +   V+
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVK 77


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 305 SFVFPLMCPQSDGFLLFVLSLFYTIFFYCL 216
           S++  L C    G  +F L   Y +  +CL
Sbjct: 426 SYLIGLFCITEGGMYVFQLLDSYAVSGFCL 455


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 305 SFVFPLMCPQSDGFLLFVLSLFYTIFFYCL 216
           S++  L C    G  +F L   Y +  +CL
Sbjct: 479 SYLIGLFCITEGGMYVFQLLDSYAVSGFCL 508


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 62  LLLHGRNRQGGGTYPCGLTR 3
           L L+G NR+  G Y C + R
Sbjct: 384 LRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 62  LLLHGRNRQGGGTYPCGLTR 3
           L L+G NR+  G Y C + R
Sbjct: 384 LRLNGINREDRGMYQCIVRR 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,938
Number of Sequences: 438
Number of extensions: 2559
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)