Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2133
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   4.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.7  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   6.3  

>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 292 MRHPP*DISSKVSSIVTTAAPPFKPKRITASRQNRQSDDTYSCGLTRGP 146
           M H P       S+ V+T+A  + P  +T +++ +  DD       R P
Sbjct: 66  MSHSPGSCMDSESAAVSTSAKCYIPPVLTPAKEPKLGDDVSGIDYIRSP 114


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 634 IAGVYIRGSLRQNLPTYLDG--PDRFSVVPCH 723
           I  VYI G+  QNLP Y DG  P  F+++  H
Sbjct: 122 IKAVYIAGTPFQNLPWYPDGYSPLDFTLLDKH 153


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 555 LDQWVRDFILQFKIDTMKFDC*FRIIIKFALEVMLR*FLLTV-SYF 421
           L++W+++ + ++ ID ++FD      I+F L +     + T+  YF
Sbjct: 214 LEKWIKNVVQEYDIDGIRFDAIKHAPIEFWLRMSKAADIFTIGEYF 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,807
Number of Sequences: 5004
Number of extensions: 53480
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)