Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2132
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   6.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   6.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   6.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 240 DTQTKSKQTCSSHECLPDEGNRTHDPRRN 154
           D Q  + Q   +       GNR +D R+N
Sbjct: 438 DNQNANNQNADNQNANKQNGNRQNDNRQN 466


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 68  RNRTERERSKEPKIISNNNSLSNNYNYN 95


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 301 RNRTERERSKEPKIISNNNSLSNNYNYN 328


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 456 RWRAVRY*KRDDGIISNNSSCYNKI*YN 373
           R R  R   ++  IISNN+S  N   YN
Sbjct: 301 RNRTERERSKEPKIISNNNSLSNNYNYN 328


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 699 PPDGEWLPSPMDFINARG 646
           PPD  W P  + F NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 197 HSCDEQVCLLFVWVS 241
           HSCD  + +  VW++
Sbjct: 580 HSCDPNLAVYGVWIN 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,787
Number of Sequences: 438
Number of extensions: 4854
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)