Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2131
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.7  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   8.6  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   8.6  
AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical...    28   8.6  

>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 576 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKS 716
           +P  + + +  P  V   VP P  V   +P  + +P+P P  V  +S
Sbjct: 1   MPPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQS 47


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 576 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQP 695
           +P  +  H  KP+   +  P P  + K +P+   +P P+P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKP 256



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 579 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKSQFQ*NTKVKVPQPY 758
           P  +  H  KP+   +  P P  + K +P+   +P P P    K   F     +  P+P 
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMP--KHKPKPFP--KPMLFPKPM 239

Query: 759 EVIKKVP 779
            + K +P
Sbjct: 240 PIPKPMP 246


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 609 PYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTV 704
           P  V   VP P  V+  +P  V VPVP P  V
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPTPV 180


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 182 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 24
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N     H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 179 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 63
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -1

Query: 177 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 4
           S H     Y   +  C  CP  +    R+P  C +P     P P  PP  PC + + P
Sbjct: 12  SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66


>AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 683 GHFHFIRDFLLNGVGSGHFDFDFVR 609
           GH    ++ L  G G+GH+ FDF+R
Sbjct: 32  GHILVGKEVLDVGCGNGHYSFDFLR 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,301
Number of Sequences: 27780
Number of extensions: 298540
Number of successful extensions: 1028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)