Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2130
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   0.58 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.3  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.4  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 612  NSLQICLVAFKCMMCLISAYDDQTLETSHGLSLEAKRNVTNSNEV 746
            N++    V FK  + L++A +D   E    LSL+ K+NV ++  V
Sbjct: 1234 NNVNEVSVLFKSFLELLAADEDLIFEADQKLSLKGKQNVQSNKSV 1278


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 369 MKSMIVKQNLQFSADNLSNVVAWHIECLKHISEIVV 476
           MKS + KQN   + DN++   +W +  + HI  IVV
Sbjct: 116 MKSFLFKQNKPLTVDNVTAFFSWWL--VSHIVWIVV 149


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 531 DPLADCIAEYTVNYAKYLALL 469
           D LAD  +EY +N+  YL L+
Sbjct: 161 DQLADASSEYVLNFLPYLTLI 181


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 136 WKIIYLKITHGCVENCVIYFI 198
           WK I + I+H C+ N +I FI
Sbjct: 892 WKDIGVSISHFCISNFLILFI 912


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 405 SADNLSNVVAWHIEC-LKHISEIVVPDILHNLQCILQYNPQVGQKFT 542
           S++NL+ ++    E  L H+ +I   D+ ++ + ++  N +VGQ +T
Sbjct: 202 SSENLNGIIENAFEDPLNHVLDIREYDVPYHSRTLIDLNIRVGQWYT 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,078
Number of Sequences: 5004
Number of extensions: 61788
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)