Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2130
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910...    31   1.0  
11_01_0782 + 6543906-6544702,6545717-6547850                           29   5.6  
05_05_0226 + 23442971-23443857,23444209-23446324                       28   7.4  

>03_02_0522 +
           9103357-9103437,9103538-9103592,9103687-9103739,
           9103832-9104060,9104149-9104284,9104448-9104496,
           9105123-9105248,9106003-9106110,9106255-9106395
          Length = 325

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 387 KQNLQFSADNLSNVVAWHIECLKHISEIVVPDILHNLQCILQYN 518
           K+  +F AD   N +   + C   + ++VV D+L +L C+ Q++
Sbjct: 202 KKQDRFKADATDNTLEDELTCSVCLEQVVVGDLLRSLPCLHQFH 245


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 267  EIFVRKHDATTLVTALCVNI-KPTKDFLATKASHLMKSMIVKQNLQFSADNLSNVVAWHI 443
            E F+ K +A   + +LC  + +PT   +   A   +KS      LQ    NL  +   +I
Sbjct: 809  EEFIIKDNALPSLLSLCFVLNRPTFPVIKGNALRFLKS------LQLLCKNLVGLSEINI 862

Query: 444  ECLKHISEIVV 476
             CLK + E+V+
Sbjct: 863  NCLKRLEEVVL 873


>05_05_0226 + 23442971-23443857,23444209-23446324
          Length = 1000

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +3

Query: 222  INQLIDELNSKPFKAEIFVRKHDATTLVTALCVNIKPTKDFLATKASHLMKSMIVKQNLQ 401
            +N+L+  L    +K E F  KH A   +  LC  +K     L T     + ++I  Q L 
Sbjct: 833  LNRLL-YLKLVAYKLENFEIKHGAFPSLRRLCFVVKSVTSALPTIKHGALPNIISLQLLC 891

Query: 402  FSADNLSNVVAWHIECLKHISEIVV 476
                 LS +   H   +KH+ EI +
Sbjct: 892  QGPVGLSGIEIRH---MKHLKEITI 913


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,062
Number of Sequences: 37544
Number of extensions: 328173
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)