Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2130
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U55363-1|AAK71420.1|  340|Caenorhabditis elegans Serpentine rece...    28   6.7  
AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear recep...    28   6.7  
AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear horm...    28   6.7  
AF068716-6|AAC17744.1|  257|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = -1

Query: 640 KATKHIWSEFGVLRYLSSCTKCIKTPLLPIKASVNF*PTCGLYCRIHCKLC-KISGTTIS 464
           K  K   S  G+L  +   T  I TPL+ I +  N  P C  + +I  ++   + GT + 
Sbjct: 64  KVLKFQSSRAGMLMLIGQVTDAISTPLVGIFSDSNILPAC--FDKIGRRMSWHLIGTVLV 121

Query: 463 EICF-----KHSMCQATTLDKLSALNWRFCFTIMLF 371
            + F     K  +C++TT + L  L W F   IM+F
Sbjct: 122 SLSFPMIFNKCFLCKSTTSEWLKVL-W-FVPFIMVF 155


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 342 FLATKASHLMKSMIVKQNLQFSADNLSNVVAWHIECLKHISEIVVPDILHNLQ 500
           +L     +L K +  K N++ S+ ++ +++   IEC  HI EI     L   Q
Sbjct: 192 YLLENEIYLTKCVKAKFNVRLSSPDIPHLIMKFIECHPHIQEIAFNGFLFTTQ 244


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 408  ADNLSNVVAWHIECLKHISEIVVPDILHNLQCILQY 515
            AD LSN+   +    K+ +E +   +LHNLQ    Y
Sbjct: 2509 ADELSNIALQYTFSTKNATETIDTTVLHNLQTNFTY 2544


>U55363-1|AAK71420.1|  340|Caenorhabditis elegans Serpentine
           receptor, class h protein30 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 405 SADNLSNVVAWHIECLKHISEIVVPDILHNLQCILQYNPQVGQKFT 542
           ++ +L N+ + +I  L  I  + VP     + CI++ +PQ  + +T
Sbjct: 7   NSSDLKNIYSTYITILNFIPIVTVPIYAEAIYCIIKRSPQFQKLYT 52


>AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-58 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 273 FVRKHDATTLVTALCVNIKPTKDFLATKASHLMKSMIV---KQNLQFSADNLSNVV 431
           F R+   + LV   C+N K  K+F   K   L++   V   ++  QF  D L++ V
Sbjct: 33  FFRRRAGSDLVEKSCMNKKCGKEFFLCKPCRLVRCYAVGMDEKKFQFDRDALASTV 88


>AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform a protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 273 FVRKHDATTLVTALCVNIKPTKDFLATKASHLMKSMIV---KQNLQFSADNLSNVV 431
           F R+   + LV   C+N K  K+F   K   L++   V   ++  QF  D L++ V
Sbjct: 31  FFRRRAGSDLVEKSCMNKKCGKEFFLCKPCRLVRCYAVGMDEKKFQFDRDALASTV 86


>AF068716-6|AAC17744.1|  257|Caenorhabditis elegans Hypothetical
           protein F26D11.9 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 109 SKGKINYIKW-KIIYLKITHGCVENCVIYF 195
           S  K  Y +W  I++ +IT+  ++NC+ YF
Sbjct: 198 SDNKFLYTRWFPIVHNRITYSVLDNCLNYF 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,634
Number of Sequences: 27780
Number of extensions: 337213
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)