Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2126
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.85 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 154 IQKHFFNSPVTFTCSFE 104
           +Q   F  P TFTC+FE
Sbjct: 336 VQTIDFGRPATFTCNFE 352


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 375 CVDVPDAGQYAECAPG 422
           CV++P  G   +C PG
Sbjct: 44  CVNLPGVGHRCQCQPG 59


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 326 QPLSGEVSPQTHQANHCLDFNSITRT*LPRETRKYHCLLFYYSCSNDSAGITKQH 162
           Q LS ++S    Q   CLD +    T L +    ++  L  Y C N+    TK H
Sbjct: 296 QDLSMKLSKNNDQ---CLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDE--TKNH 345


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 326 QPLSGEVSPQTHQANHCLDFNSITRT*LPRETRKYHCLLFYYSCSNDSAGITKQH 162
           Q LS ++S    Q   CLD +    T L +    ++  L  Y C N+    TK H
Sbjct: 188 QDLSMKLSKNNDQ---CLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDE--TKNH 237


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 242 PRETRKYHCLLFYYSCSNDSAGITKQHSWNS 150
           P + + Y  LL   +CS  S+  T  HS  S
Sbjct: 181 PDQYQSYQILLPTPTCSEASSSPTPSHSSES 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,889
Number of Sequences: 336
Number of extensions: 2860
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)