Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2124
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   2.3  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   5.2  
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   6.9  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 766 SVPNNPIRRLPYKYTRVILLSNSIKL*H*STFAERVSRYPPI 641
           S P+N     PY   +V L  NS  L   S+F    +R PPI
Sbjct: 28  SAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQHGQTRLPPI 69


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 83  IYTLVGCRQYSLDLV 127
           IY L+GCR YS D V
Sbjct: 89  IYPLLGCRMYSYDFV 103


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 621 NIPTKLKDSNSFGDMRLTDTTTIHEKLLIRTSLANKYI 508
           N+    K S  F D  LT++ T    LL++ S  N+Y+
Sbjct: 224 NLIRGCKPSALFSDASLTNSQTELNSLLLKESTQNRYL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,962
Number of Sequences: 5004
Number of extensions: 57334
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)