Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2120
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.27 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   0.61 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   0.81 
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.3  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   4.3  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   5.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   5.7  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   7.6  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   7.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   7.6  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      24   10.0 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    24   10.0 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   10.0 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 21/80 (26%), Positives = 29/80 (36%)
 Frame = -3

Query: 258  PNPQGPGESPRRSYDQPKDQPTVWTMTPARTAEIGPSAL*THWGWDAPRPGHEGQPATDS 79
            P P G    P  S   P  +P+V      + +   P           P+P     P    
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS-VAAPPVPV 1135

Query: 78   QRRAPPLPEPKAASQPVHTP 19
               APP+P+P  A+ PV  P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAP 1155



 Score = 27.5 bits (58), Expect = 0.81
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P+P     P   +   APP+P+P  A+ PV  P
Sbjct: 1143 PKPS-VAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 285  KXGVLCHDSPNPQGPGESPRRSYDQPK-DQPTVWTMTPARTAEIGPSAL*THWGWDAPRP 109
            K  V     P P G    P+ S   P    P+     P  +    P    +      P+P
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184

Query: 108  GHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
               G P       APP+P+P     PV  P
Sbjct: 1185 A-AGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P+P   G P       APP+P P A   PV  P
Sbjct: 1201 PKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQ 13
            P+P     P        PP+P+P A   PV  P +
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P P     P      +APP+P P + +  V TP
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252



 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -3

Query: 114  RPGHEGQPATDSQRRAPP-----LPEPKAASQPVHTPPQ 13
            RP ++G+ A+  +  APP     LP     S P   PP+
Sbjct: 950  RPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPK 988



 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 93   PATDSQRRAPPLPEPKAASQPVHTP 19
            P      +APP+P P A + P+  P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVP 1037


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 258 PNPQGPGESPRRSYDQPKDQPTVWTMTPARTA 163
           PNPQG   +       P+DQP+     P RTA
Sbjct: 299 PNPQGNVGAQSLQSMSPQDQPSTQQQQPQRTA 330


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 361 AVGSAVIRCRNSPKQPCPVSTCVSRKVRRPLSRFTQSTRTGRIASTVLRPAEGSANRLDH 182
           A  S V       KQ  PVST  +   RRP S  T  ++TG + +   + + G   R DH
Sbjct: 24  ASSSGVNGTNGGMKQVSPVSTARTSIARRPPS--TVGSQTGSLVNAPPKRSSG-IERFDH 80

Query: 181 DSST 170
            + T
Sbjct: 81  VTGT 84


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 132 WGWDAPRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQRR 7
           W +  P+P  +    T  QR+   LPE  + S    TPP+ R
Sbjct: 166 WQFVRPQPTFDDLQLTPLQRKLMGLPEGGSTSGKHLTPPRYR 207


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPP 16
           P P     P+T   R+ PPL   +A S P   PP
Sbjct: 362 PPPPPRSAPSTG--RQPPPLSSSRAVSNPPAPPP 393



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = -3

Query: 117 PRPGHEGQ-PATDSQRRAPPLPEPKAASQPVHTPP 16
           PR    G  P     R APP P P++A      PP
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 98  PSCPGRGASQPQCVQSAEGPISAVRAGVMVQ 190
           PS P R  S+P  +   + P   VR  VM Q
Sbjct: 120 PSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQ 150


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 36   GTPPWVLEAEALAADYQWRADLRARDVARPSPSVFRARRDQSRR 167
            G  PWV E  A  A+Y  R +   R +   +  V + + +  RR
Sbjct: 898  GKQPWVDEINARRANYSTRLEEYQRQINSYNVRVAQIKSEHQRR 941


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 253 STRTGRIASTVLRPAEGSANRLDHD-----SSTDRRDWSLRALNTL 131
           +  T  I +++LR   G  N+L+H       ++   D SLR L T+
Sbjct: 138 ANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRSLRTLKTM 183


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 105 ARDVARPSPSVFRARRDQSRRSVLESWSRRLADPSAGRRT 224
           A + A    +  RAR+    RS    WS R+  P+ G  T
Sbjct: 232 ASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNT 271


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 138  THWGWDAPRPGHEGQPATDSQRRAPPLP 55
            T   W AP PG       DS +  PP P
Sbjct: 963  TPGAWAAPTPGGWDDEEGDSPKYVPPSP 990


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +3

Query: 105  ARDVAR--PSPSV---FRARRDQSRRSVLESWSRR 194
            AR++A   P P V   FR+R+ Q RRS +  W+ R
Sbjct: 1386 AREIATKTPLPIVDLKFRSRQLQRRRSQIGEWAER 1420


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +3

Query: 129 PSVFRARRDQSRRSVLESWSRRLADPSAGR------RTVEAIRPVLVDWVNRDRGR 278
           PS    + + S  ++LES  R  ++PS  R      +TVE+++   +  V  D G+
Sbjct: 827 PSSVMGKENASEDTILESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGK 882


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 95   SPPLIVSGERLRFQNPRRRPSQYTRRL 15
            +PP  V   RL  ++PRR P QY  R+
Sbjct: 1262 APPGAVMARRLMTKDPRREP-QYGERV 1287


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -3

Query: 153 PSAL*THWGWDAPRPGHEGQPATDSQRRAPPLPE---PKAASQPVHTPP 16
           P +L + W  D+     +        R  PP+P    P A+   V+ PP
Sbjct: 120 PPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPPPHLPNASGSSVYQPP 168


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 69  APPLPEPKAASQPVHTPPQ 13
           A   P P AA + V TPPQ
Sbjct: 205 AQKAPVPSAAEESVSTPPQ 223


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 216  DQPKDQPTVWTMTPARTAEIGPSAL*THWGWDAPRPGHEGQPATD-SQRRAPPLPEPKAA 40
            D+ KDQPTV+       A++G     +H  +D           +D S + APP P P A 
Sbjct: 1840 DESKDQPTVY------KAKLGEK---SHLHYDKELKRWVNDDGSDLSNQAAPPPPPPMAL 1890

Query: 39   SQPVHTPP 16
              P   PP
Sbjct: 1891 --PKAGPP 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,751
Number of Sequences: 5004
Number of extensions: 38672
Number of successful extensions: 142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)