Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2120
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 119  RHVPGTKVSPPLIVSGERL 63
            + VPGT   P + V+GE++
Sbjct: 1518 KFVPGTTSQPEVFVNGEKI 1536


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -3

Query: 138  THWGWDAPRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQRRWC 1
            +H  WD  R  +E        RR PP P   +A    H   +   C
Sbjct: 1678 SHSTWDPRRHMYEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEIC 1723


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 151 GTNLGGPCWSHGP 189
           G   GG C  HGP
Sbjct: 427 GARFGGSCLIHGP 439


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 151 GTNLGGPCWSHGP 189
           G   GG C  HGP
Sbjct: 427 GARFGGSCLIHGP 439


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 118 RVPAPVCSERGGTNLGGPCWSHGP 189
           R P   CS  GG     P  +H P
Sbjct: 583 RRPQRACSTTGGVPSKSPTLTHSP 606


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 368 ALCRRLGCDPVQELTEATMPSEHLREP*SXASSVTIH 258
           ALC+ LG   VQ+++      + + E       +T H
Sbjct: 133 ALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYH 169


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 96   QPATDSQRRAPPLPEPKAASQPVHTPPQ 13
            QP    Q + P + +P    +  +TPPQ
Sbjct: 974  QPGGVVQSQQPIMTDPSPFKRGRYTPPQ 1001


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 217 RPAEGSANRLDHDSSTDRRD 158
           +PAEG    + H   TD+ D
Sbjct: 411 KPAEGMLTDVFHVQETDKYD 430


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 327 EFLHRITAEPTAXCHHCGCD 386
           +FL R  A   A CH C  D
Sbjct: 734 QFLCRYEAHCFALCHCCDFD 753


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 240 PVLVDWVNRDRG 275
           P  + W NR+RG
Sbjct: 475 PRYIKWTNRERG 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,142
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)