Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2118
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   3.3  
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c...    26   3.3  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   3.3  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   7.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   9.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   9.9  

>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 297 RPERSQKPKQMEADGTKSHEGPS 229
           RP + QK KQ    G+K+ E P+
Sbjct: 155 RPSKPQKEKQGNKQGSKTEESPN 177


>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 222 VSLMALRGSLYHQLPFASVFGFSQGVCNRVQ*AQLSDPTNSL 347
           V+  A +G    Q    S F F  G+C++V+  +L    NSL
Sbjct: 58  VNKQAEQGKEQQQYAMKSQFQFRSGICSKVRSDELGFKGNSL 99


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 294 PERSQKPKQMEADGTKSHEGPSGTRPSAM 208
           PE  +  K ++ D  +S E P  TRP A+
Sbjct: 420 PEELENMKYLQIDTPESKEYPRSTRPRAL 448


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 164 VSFEGRV*LEVLITRCSMPPHDFLSLAVLI 75
           VS +GRV +EV I +  + P D +S+ V I
Sbjct: 285 VSSDGRVVVEVSIPKLCIGPSDLVSVFVSI 314


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 299 LQQSPMSAVI*SDQQFGGRPAGLFPSTLPCHNQSFKVVWW 418
           LQ  P      + ++F G P  L P TL    Q   V WW
Sbjct: 816 LQSVPFFRQPDAPKRFVGTPDYLAPETLRGSTQDDMVDWW 855


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 275 RSKWKLMVQRATKGHQGHDLQQ*SIRLKRRIASSSESVSFE 153
           +S+ +++V R T   +  DLQ  +  + +   SSS SV+++
Sbjct: 656 KSRARIVVSRKTMSVENEDLQSETEDIDQVPTSSSSSVTYD 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,670
Number of Sequences: 5004
Number of extensions: 35367
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)