Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2118
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0921 + 7753744-7753821,7753921-7754856,7755285-7755377,775...    32   0.26 
12_02_1057 + 25733376-25735439                                         31   0.35 
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781...    30   0.80 
12_02_1060 - 25752181-25754229                                         29   1.8  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   2.4  
01_07_0210 + 42010460-42010553,42010660-42010851,42011353-42011678     29   2.4  
12_02_1051 + 25696499-25696888                                         28   4.3  
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979...    28   4.3  
06_01_1019 - 7971606-7972077,7972550-7972752                           27   5.6  
06_01_0755 + 5648872-5649471,5650092-5650453,5650576-5650619,565...    27   7.4  
01_06_0593 - 30468654-30469109                                         27   7.4  
01_01_0153 - 1352982-1353731                                           27   7.4  
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172...    27   9.8  

>07_01_0921 +
           7753744-7753821,7753921-7754856,7755285-7755377,
           7755462-7755815
          Length = 486

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 435 YIYIGGHQTTLKD*--LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQME 262
           ++ +G    TL+D   LW   + G+   G+    W D I  L+G+  +     QK ++ E
Sbjct: 86  HLPVGEMTITLQDVSCLWGLPIHGRPITGQADGSWVDMIERLLGIPMEEQHMKQKKRKKE 145

Query: 261 ADGT 250
            D T
Sbjct: 146 DDMT 149


>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
           ++GL C  P+RS +P   +A G    E P  + P+ M  +T
Sbjct: 607 VVGLWCAHPDRSLRPTIRQAVGVLRGEAPPPSLPARMPVAT 647


>06_03_0819 -
           24977204-24977290,24977372-24977746,24977823-24978199,
           24978456-24978770,24978861-24979296,24979386-24979463
          Length = 555

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 435 YIYIGGHQTTLKD*--LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQME 262
           ++ IG    TL+D   LW   + GK   G+    WSD I   +G+  +  E  +K ++ E
Sbjct: 86  HLPIGEMTITLQDISCLWGLPISGKLIVGQYDGNWSDMIERYLGIPPEDQEMKKKKRKKE 145

Query: 261 AD 256
            D
Sbjct: 146 DD 147


>12_02_1060 - 25752181-25754229
          Length = 682

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
           ++GL C  P+RS +P   +A      E P  + P+ M  +T
Sbjct: 605 IVGLWCAHPDRSVRPVIRQAVSVLRGEAPPPSLPARMPVAT 645


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
           ++GL C  P+RS +P   +A      E P  + P+ M  +T
Sbjct: 705 VVGLWCAHPDRSVRPVIRQAISVLRGEAPPPSLPARMPVAT 745


>01_07_0210 + 42010460-42010553,42010660-42010851,42011353-42011678
          Length = 203

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 354 RPPNCWSDQITALI 313
           RPPNCW+D+  A++
Sbjct: 107 RPPNCWADRAAAIV 120


>12_02_1051 + 25696499-25696888
          Length = 129

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 318 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
           ++GL C  P+RS +P   +A      E P  + P+ M  +T
Sbjct: 51  VVGLWCAHPDRSLRPTIRQAVSVLRGEVPPPSLPTRMPVAT 91


>02_05_0339 -
           28094581-28094817,28095011-28096381,28097713-28097922,
           28098047-28098283,28098677-28099041,28099661-28099970
          Length = 909

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 393 LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQMEAD 256
           LW   ++G+   G+    W D+I  L+G+   +    QK ++ + D
Sbjct: 450 LWGLPIQGEPIIGKLEGPWVDEIETLLGVTPGKQVMKQKKRKADGD 495


>06_01_1019 - 7971606-7972077,7972550-7972752
          Length = 224

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 441 YIYIYIGGHQTTLKD*LWQGKVEGK 367
           Y+  ++GG Q  + D  W+ KVE K
Sbjct: 154 YMIQFVGGVQDNMSDFFWKAKVENK 178


>06_01_0755 +
           5648872-5649471,5650092-5650453,5650576-5650619,
           5651324-5651538,5651643-5651767,5651862-5651931
          Length = 471

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 164 PTQKKRLFFFLVEYFIAEGRVPDGPSWLFVPSASICFGFWLLSGRLQQSPMS 319
           P ++   F  ++E  ++ GR+  GP W  V    +   F L  G +Q  P+S
Sbjct: 4   PARRSTRFCLVIEEVVSPGRLGRGPPWAAV-GLRLKKVFKLELGSIQAEPIS 54


>01_06_0593 - 30468654-30469109
          Length = 151

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 297 RPERSQKPKQMEADGTKSHEGPSGTR 220
           +PE    P+  E DG   HE P G R
Sbjct: 46  QPEERDSPEIHEKDGDCGHEDPGGVR 71


>01_01_0153 - 1352982-1353731
          Length = 249

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -3

Query: 351 PPNC-WSDQITALIGLC--CKRPERSQKPKQMEADGTKSHEGP 232
           PP C   D++      C  C+R E S+ P+ +  D    H GP
Sbjct: 199 PPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGP 241


>08_01_0216 -
           1717696-1718265,1718856-1720082,1720558-1720627,
           1721579-1721602,1722073-1722140
          Length = 652

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 393 LWQGKVEGKRPAGRPPNCWSDQITAL 316
           LW G   G RP    P+ W D ++ L
Sbjct: 209 LWNGISTGARPRHSSPDWWYDDVSCL 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,153,841
Number of Sequences: 37544
Number of extensions: 266185
Number of successful extensions: 814
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)