Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2118
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 3.8
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 28 3.8
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 27 5.0
AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein. 27 5.0
AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channe... 27 5.0
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 27 6.6
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 27 6.6
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 6.6
Z50029-1|CAA90340.2| 460|Caenorhabditis elegans Hypothetical pr... 27 8.8
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 24 9.1
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 24 9.2
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 24 9.2
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 24 STRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLD 146
+ +W DL K + N+G + RQ G R D H KLD
Sbjct: 1433 NAQWGDLKKQVW--NKGLRLRQAADQKGLDRILEDAHAKLD 1471
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 24 STRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLD 146
+ +W DL K + N+G + RQ G R D H KLD
Sbjct: 1433 NAQWGDLKKQVW--NKGLRLRQAADQKGLDRILEDAHAKLD 1471
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 24 STRWSDLVKTLTGNNRGYKNRQGQKVMGWHRASSDQHFKLD 146
+ +W DL K + N+G + RQ G R D H KLD
Sbjct: 1433 NAQWGDLKKQVW--NKGLRLRQAADQKGLDRILEDAHAKLD 1471
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 420 GHQTTLKD*LWQGKVEGKRPAGRPPNCWSDQI 325
G TTL + W + E KRP GRPP W+D +
Sbjct: 135 GRWTTLMND-WCPRDE-KRPVGRPPMRWNDSL 164
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 312 GLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 196
G CKRP Q P+ T + PSG + M + T
Sbjct: 273 GYLCKRPAGVQCPQYPPVTVTPAPSNPSGCNSTIMSFGT 311
>AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein.
Length = 164
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 463 FFLSIAFIYIYIYRRP 416
FFL IA+I +YIY+ P
Sbjct: 9 FFLCIAYILLYIYKHP 24
>AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform d protein.
Length = 164
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 463 FFLSIAFIYIYIYRRP 416
FFL IA+I +YIY+ P
Sbjct: 9 FFLCIAYILLYIYKHP 24
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 839 KRPVGRPPMRWTDSL 853
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 1014 KRPVGRPPMRWTDSL 1028
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 753 KRPVGRPPMRWTDSL 767
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 369 KRPAGRPPNCWSDQI 325
KRP GRPP W+D +
Sbjct: 365 KRPVGRPPMRWTDSL 379
>Z50029-1|CAA90340.2| 460|Caenorhabditis elegans Hypothetical
protein ZC504.1 protein.
Length = 460
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 345 NCWSDQITALIGLCCKRPERSQKP 274
+C S Q +LIG CC P+ + +P
Sbjct: 239 SCQSSQSGSLIGFCCTIPKINYRP 262
>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical protein
C34E10.8 protein.
Length = 1024
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 360 AGRPPNCWSDQITALIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSA 211
+G PP S ++A + K E+ +PK ++ ++ PSG P A
Sbjct: 885 SGEPPAKKSSDVSAPVPSPEKEKEKIDRPKTPKSSTKRTTPTPSGRTPRA 934
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 24.2 bits (50), Expect(2) = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 209 IAEGRVPDGPSWLFV 253
I G+ PD P+W FV
Sbjct: 193 IGNGQFPDSPAWRFV 207
Score = 20.6 bits (41), Expect(2) = 9.1
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +2
Query: 263 SICFGFWLLS 292
S+C+G W++S
Sbjct: 239 SVCYGTWIVS 248
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 24.2 bits (50), Expect(2) = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 209 IAEGRVPDGPSWLFV 253
I G+ PD P+W FV
Sbjct: 180 IGNGQFPDSPAWRFV 194
Score = 20.6 bits (41), Expect(2) = 9.2
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +2
Query: 263 SICFGFWLLS 292
S+C+G W++S
Sbjct: 226 SVCYGTWIVS 235
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 24.2 bits (50), Expect(2) = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 209 IAEGRVPDGPSWLFV 253
I G+ PD P+W FV
Sbjct: 77 IGNGQFPDSPAWRFV 91
Score = 20.6 bits (41), Expect(2) = 9.2
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +2
Query: 263 SICFGFWLLS 292
S+C+G W++S
Sbjct: 123 SVCYGTWIVS 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,496,134
Number of Sequences: 27780
Number of extensions: 205580
Number of successful extensions: 520
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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