Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2117
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 76 3e-14
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 76 3e-14
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 76 3e-14
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ... 31 0.96
Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF045646-8|AAK29830.1| 541|Caenorhabditis elegans Udp-glucurono... 29 2.9
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 29 3.9
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical p... 29 5.1
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 29 5.1
Z54307-6|CAA91093.1| 77|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 28 8.9
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 75.8 bits (178), Expect = 3e-14
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 15/234 (6%)
Frame = +3
Query: 33 KFILTLQDDLTKYSQAYPMVTCSAEETARSLVKY--ISHIGIPKIIITDQGANFSSEVMK 206
++ILT+ D TKY A P+ AE ++ V+ I IP ++TDQG F + +
Sbjct: 1639 RYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFA 1698
Query: 207 QLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSN 386
Q + I+HI Y+ + GA+ER + T+ ++ WD + A+ AYN+
Sbjct: 1699 QFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPME-WDDQVVYAVYAYNNC 1757
Query: 387 IHSTTGFSPLELLFG---FKPYIPKSIDSLDLNTYSD---YIRALNHRLYYSRQKALQNI 548
+H TG +P+ L+ G P D++ +N Y+D Y L L ++ A ++
Sbjct: 1758 VHENTGETPMFLMHGRDVMGPLEMSGEDAVGIN-YADMDEYKHLLTQELLKVQKIAKEHA 1816
Query: 549 ESSKERSKKYYDSH--SKPITY-NIGDMVYVRCHHKQNKALSP----VWKGPYK 689
+E K +D SK + G V + ++ A P W GPY+
Sbjct: 1817 MREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYR 1870
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 75.8 bits (178), Expect = 3e-14
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 15/234 (6%)
Frame = +3
Query: 33 KFILTLQDDLTKYSQAYPMVTCSAEETARSLVKY--ISHIGIPKIIITDQGANFSSEVMK 206
++ILT+ D TKY A P+ AE ++ V+ I IP ++TDQG F + +
Sbjct: 1542 RYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFA 1601
Query: 207 QLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSN 386
Q + I+HI Y+ + GA+ER + T+ ++ WD + A+ AYN+
Sbjct: 1602 QFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPME-WDDQVVYAVYAYNNC 1660
Query: 387 IHSTTGFSPLELLFG---FKPYIPKSIDSLDLNTYSD---YIRALNHRLYYSRQKALQNI 548
+H TG +P+ L+ G P D++ +N Y+D Y L L ++ A ++
Sbjct: 1661 VHENTGETPMFLMHGRDVMGPLEMSGEDAVGIN-YADMDEYKHLLTQELLKVQKIAKEHA 1719
Query: 549 ESSKERSKKYYDSH--SKPITY-NIGDMVYVRCHHKQNKALSP----VWKGPYK 689
+E K +D SK + G V + ++ A P W GPY+
Sbjct: 1720 MREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYR 1773
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 75.8 bits (178), Expect = 3e-14
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 15/234 (6%)
Frame = +3
Query: 33 KFILTLQDDLTKYSQAYPMVTCSAEETARSLVKY--ISHIGIPKIIITDQGANFSSEVMK 206
++ILT+ D TKY A P+ AE ++ V+ I IP ++TDQG F + +
Sbjct: 1553 RYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFA 1612
Query: 207 QLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSN 386
Q + I+HI Y+ + GA+ER + T+ ++ WD + A+ AYN+
Sbjct: 1613 QFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPME-WDDQVVYAVYAYNNC 1671
Query: 387 IHSTTGFSPLELLFG---FKPYIPKSIDSLDLNTYSD---YIRALNHRLYYSRQKALQNI 548
+H TG +P+ L+ G P D++ +N Y+D Y L L ++ A ++
Sbjct: 1672 VHENTGETPMFLMHGRDVMGPLEMSGEDAVGIN-YADMDEYKHLLTQELLKVQKIAKEHA 1730
Query: 549 ESSKERSKKYYDSH--SKPITY-NIGDMVYVRCHHKQNKALSP----VWKGPYK 689
+E K +D SK + G V + ++ A P W GPY+
Sbjct: 1731 MREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWSGPYR 1784
>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
protein F56H1.5 protein.
Length = 1015
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 513 LYYSRQKALQNIESSKERSKKYYDSHSKPITY-NIGDMVYVRCHH 644
LY + + +N+E K+ KKYY S +T+ N GD+ Y+ H+
Sbjct: 685 LYINENEEKKNVEEQKK--KKYYYSIRFNVTFQNTGDICYIAYHY 727
>Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical
protein T07C5.2 protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 150 YRYGRYTLLMNELFLRRSM*PW 85
++YG+Y +LF RRSM PW
Sbjct: 17 FKYGKYLCNSCDLFFRRSMTPW 38
>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
protein ZK675.2 protein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 462 SLDLNTYSDYIRA----LNHRLYYSRQKALQNIESSKERSKKYYDSHSKPITYNIGDMV 626
+ ++N ++DY+R LNH++ + K L+N+ E + + ++ P I D++
Sbjct: 220 NFEINNFNDYMRMKITKLNHQVNHGYAKPLENVSRIMEGFSVFVNGYTDPPALVIRDLM 278
>AF045646-8|AAK29830.1| 541|Caenorhabditis elegans
Udp-glucuronosyltransferase protein52 protein.
Length = 541
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 276 LERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSNIHST-TGFSPLELLFGFKPYIPK 452
L +SH + L +VEN HT DL + NS++ S T + +GF+ P
Sbjct: 41 LGKSHIDFTDSLIESLVENGHTVDLII----ARMNSHVKSNGTNMVTRKYTYGFQEESPW 96
Query: 453 SIDSLDLNTYSDYIRALNHRLYY 521
+ LN + R N YY
Sbjct: 97 NKAPHLLNPFKGRERTWNEHTYY 119
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 147 GIPKIIITDQGANFSS--EVMKQLERLFGIK 233
G+P II + G+N ++ E +K+LERL+G +
Sbjct: 174 GVPDAIIGNSGSNAATTLETIKELERLYGTR 204
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 54 DDLTKYSQAYPMVTCSAEETARSLVKYI 137
D+L S A+P VTC+A TAR ++
Sbjct: 846 DELVDKSPAFPEVTCTAFSTARRFCPFV 873
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 54 DDLTKYSQAYPMVTCSAEETARSLVKYI 137
D+L S A+P VTC+A TAR ++
Sbjct: 846 DELVDKSPAFPEVTCTAFSTARRFCPFV 873
>U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical
protein C33H5.2 protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 388 ILELYASIAVLRYKSHV---CWFSTIYDLRYSFRVE*LLSRAPQVC 260
I +L+A + +RY S + C+ YD YS R E + PQ C
Sbjct: 417 IKKLFAELPKIRYYSDLVLKCYNEKFYDYFYSGRYEKITCPGPQYC 462
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 54 DDLTKYSQAYPMVTCSAEETARSLVKYI 137
D+L S A+P VTC+A TAR ++
Sbjct: 846 DELVDKSPAFPEVTCTAFSTARRFCPFV 873
>Z54307-6|CAA91093.1| 77|Caenorhabditis elegans Hypothetical
protein F14F11.2 protein.
Length = 77
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 347 VPCMLVFN--YIRPKIFFQSRMTSF*GATSLRVIWRSKNVFYS 225
V C+LV N YI P ++ ++ + + LR + S+N F+S
Sbjct: 12 VACLLVSNAMYINPDYYYVEQLPTMKKSGQLRALAGSRNCFFS 54
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 348 LYLRTAMLAYNS-NIHSTTGFSPLELLFGFKPYIPKSID 461
L LR AM A N +HST +P + FKP +P D
Sbjct: 2009 LVLRVAMEAKNELRMHSTAESTPRNEVKVFKPVVPNQYD 2047
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,249
Number of Sequences: 27780
Number of extensions: 363321
Number of successful extensions: 955
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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